Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.77■□□□□ 0.43
LIM2P55344 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIM2P55344 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIM2P55344 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.76■□□□□ 0.43
LIM2P55344 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
LIM2P55344 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIM2P55344 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIM2P55344 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIM2P55344 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.76■□□□□ 0.43
LIM2P55344 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LIM2P55344 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIM2P55344 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIM2P55344 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.76■□□□□ 0.43
LIM2P55344 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
LIM2P55344 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIM2P55344 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIM2P55344 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
LIM2P55344 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
LIM2P55344 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LIM2P55344 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIM2P55344 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.76■□□□□ 0.43
LIM2P55344 AC145285.6-201ENST00000604632 637 ntBASIC17.76■□□□□ 0.43
LIM2P55344 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
LIM2P55344 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
LIM2P55344 AC133561.5-201ENST00000635547 218 ntBASIC17.76■□□□□ 0.43
LIM2P55344 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.76■□□□□ 0.43
LIM2P55344 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIM2P55344 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
LIM2P55344 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LIM2P55344 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
LIM2P55344 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIM2P55344 AL031598.1-201ENST00000561511 1773 ntBASIC17.76■□□□□ 0.43
LIM2P55344 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIM2P55344 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.75■□□□□ 0.43
LIM2P55344 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.75■□□□□ 0.43
LIM2P55344 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.75■□□□□ 0.43
LIM2P55344 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIM2P55344 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIM2P55344 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.75■□□□□ 0.43
LIM2P55344 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.75■□□□□ 0.43
LIM2P55344 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.75■□□□□ 0.43
LIM2P55344 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIM2P55344 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.75■□□□□ 0.43
LIM2P55344 AC007613.1-201ENST00000572811 2597 ntBASIC17.75■□□□□ 0.43
LIM2P55344 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.75■□□□□ 0.43
LIM2P55344 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.75■□□□□ 0.43
LIM2P55344 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.75■□□□□ 0.43
LIM2P55344 ECEL1P2-202ENST00000465689 757 ntBASIC17.75■□□□□ 0.43
LIM2P55344 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.75■□□□□ 0.43
LIM2P55344 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIM2P55344 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.75■□□□□ 0.43
LIM2P55344 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.75■□□□□ 0.43
LIM2P55344 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.75■□□□□ 0.43
LIM2P55344 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIM2P55344 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LIM2P55344 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIM2P55344 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LIM2P55344 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.75■□□□□ 0.43
LIM2P55344 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.75■□□□□ 0.43
LIM2P55344 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 KRT18P22-201ENST00000402024 1347 ntBASIC17.74■□□□□ 0.43
LIM2P55344 AL109659.2-201ENST00000606809 1674 ntBASIC17.74■□□□□ 0.43
LIM2P55344 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
LIM2P55344 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.74■□□□□ 0.43
LIM2P55344 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.74■□□□□ 0.43
LIM2P55344 MCCD1P1-208ENST00000445732 328 ntBASIC17.74■□□□□ 0.43
LIM2P55344 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.74■□□□□ 0.43
LIM2P55344 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.74■□□□□ 0.43
LIM2P55344 FAM87A-204ENST00000613235 858 ntBASIC17.74■□□□□ 0.43
LIM2P55344 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
LIM2P55344 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LIM2P55344 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.74■□□□□ 0.43
LIM2P55344 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.74■□□□□ 0.43
LIM2P55344 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.74■□□□□ 0.43
LIM2P55344 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.74■□□□□ 0.43
LIM2P55344 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.74■□□□□ 0.43
LIM2P55344 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.74■□□□□ 0.43
LIM2P55344 AC008556.1-201ENST00000610908 2040 ntBASIC17.74■□□□□ 0.43
LIM2P55344 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIM2P55344 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
LIM2P55344 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.73■□□□□ 0.43
LIM2P55344 MTMR9LP-203ENST00000426597 1545 ntBASIC17.73■□□□□ 0.43
LIM2P55344 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms