Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
VCPP55072 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.02■□□□□ 0.8
VCPP55072 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
VCPP55072 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.02■□□□□ 0.8
VCPP55072 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
VCPP55072 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
VCPP55072 AL845331.1-201ENST00000424978 1190 ntBASIC20.02■□□□□ 0.8
VCPP55072 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 MFAP1P1-201ENST00000442257 1255 ntBASIC20.02■□□□□ 0.8
VCPP55072 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.02■□□□□ 0.8
VCPP55072 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.02■□□□□ 0.8
VCPP55072 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
VCPP55072 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.02■□□□□ 0.8
VCPP55072 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.02■□□□□ 0.8
VCPP55072 AC011298.2-201ENST00000617989 482 ntBASIC20.02■□□□□ 0.8
VCPP55072 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.02■□□□□ 0.8
VCPP55072 AC010653.2-201ENST00000623505 997 ntBASIC20.02■□□□□ 0.8
VCPP55072 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
VCPP55072 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
VCPP55072 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VCPP55072 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.02■□□□□ 0.79
VCPP55072 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
VCPP55072 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
VCPP55072 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
VCPP55072 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
VCPP55072 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VCPP55072 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.01■□□□□ 0.79
VCPP55072 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VCPP55072 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.01■□□□□ 0.79
VCPP55072 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
VCPP55072 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
VCPP55072 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VCPP55072 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC20.01■□□□□ 0.79
VCPP55072 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.01■□□□□ 0.79
VCPP55072 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VCPP55072 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.01■□□□□ 0.79
VCPP55072 CR769767.2-201ENST00000622735 460 ntBASIC20.01■□□□□ 0.79
VCPP55072 AL031432.5-201ENST00000641059 760 ntBASIC20.01■□□□□ 0.79
VCPP55072 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VCPP55072 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VCPP55072 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
VCPP55072 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
VCPP55072 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.01■□□□□ 0.79
VCPP55072 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VCPP55072 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
VCPP55072 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VCPP55072 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.01■□□□□ 0.79
VCPP55072 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VCPP55072 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VCPP55072 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.01■□□□□ 0.79
VCPP55072 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
VCPP55072 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
VCPP55072 SLC25A1P2-201ENST00000430693 912 ntBASIC20■□□□□ 0.79
VCPP55072 ATP5G2P1-201ENST00000433580 426 ntBASIC20■□□□□ 0.79
VCPP55072 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20■□□□□ 0.79
VCPP55072 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20■□□□□ 0.79
VCPP55072 Z85996.1-201ENST00000494644 937 ntBASIC20■□□□□ 0.79
VCPP55072 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20■□□□□ 0.79
VCPP55072 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20■□□□□ 0.79
VCPP55072 AL136038.3-201ENST00000561909 1096 ntBASIC20■□□□□ 0.79
VCPP55072 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
VCPP55072 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
VCPP55072 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
VCPP55072 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 KRT8P10-201ENST00000450021 1447 ntBASIC20■□□□□ 0.79
VCPP55072 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 AL049812.1-201ENST00000432563 2267 ntBASIC20■□□□□ 0.79
VCPP55072 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCPP55072 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
VCPP55072 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms