Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC113410.3-201ENST00000623366 203 ntBASIC19.64■□□□□ 0.73
LIG3P49916 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.64■□□□□ 0.73
LIG3P49916 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIG3P49916 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.64■□□□□ 0.73
LIG3P49916 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIG3P49916 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIG3P49916 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIG3P49916 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
LIG3P49916 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIG3P49916 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
LIG3P49916 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC19.64■□□□□ 0.73
LIG3P49916 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
LIG3P49916 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
LIG3P49916 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.63■□□□□ 0.73
LIG3P49916 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
LIG3P49916 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.63■□□□□ 0.73
LIG3P49916 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.63■□□□□ 0.73
LIG3P49916 AL353807.1-201ENST00000427475 662 ntBASIC19.63■□□□□ 0.73
LIG3P49916 TSPY7P-201ENST00000431358 1114 ntBASIC19.63■□□□□ 0.73
LIG3P49916 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.63■□□□□ 0.73
LIG3P49916 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.63■□□□□ 0.73
LIG3P49916 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.63■□□□□ 0.73
LIG3P49916 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.63■□□□□ 0.73
LIG3P49916 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
LIG3P49916 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG3P49916 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.62■□□□□ 0.73
LIG3P49916 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG3P49916 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.62■□□□□ 0.73
LIG3P49916 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG3P49916 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG3P49916 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
LIG3P49916 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.62■□□□□ 0.73
LIG3P49916 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.62■□□□□ 0.73
LIG3P49916 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG3P49916 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG3P49916 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG3P49916 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG3P49916 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG3P49916 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG3P49916 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.62■□□□□ 0.73
LIG3P49916 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.62■□□□□ 0.73
LIG3P49916 KRT18P16-201ENST00000510337 1294 ntBASIC19.62■□□□□ 0.73
LIG3P49916 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.62■□□□□ 0.73
LIG3P49916 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.62■□□□□ 0.73
LIG3P49916 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
LIG3P49916 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
LIG3P49916 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.62■□□□□ 0.73
LIG3P49916 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG3P49916 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.62■□□□□ 0.73
LIG3P49916 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG3P49916 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG3P49916 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.62■□□□□ 0.73
LIG3P49916 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
LIG3P49916 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
LIG3P49916 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIG3P49916 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
LIG3P49916 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG3P49916 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIG3P49916 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
LIG3P49916 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.61■□□□□ 0.73
LIG3P49916 AL139384.1-201ENST00000612143 3047 ntBASIC19.61■□□□□ 0.73
LIG3P49916 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG3P49916 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG3P49916 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.61■□□□□ 0.73
LIG3P49916 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.61■□□□□ 0.73
LIG3P49916 TUBB8P6-201ENST00000436895 1288 ntBASIC19.61■□□□□ 0.73
LIG3P49916 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.61■□□□□ 0.73
LIG3P49916 AP002982.1-201ENST00000492365 877 ntBASIC19.61■□□□□ 0.73
LIG3P49916 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.61■□□□□ 0.73
LIG3P49916 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG3P49916 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.61■□□□□ 0.73
LIG3P49916 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG3P49916 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIG3P49916 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG3P49916 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LIG3P49916 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIG3P49916 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.61■□□□□ 0.73
LIG3P49916 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG3P49916 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIG3P49916 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
LIG3P49916 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.6■□□□□ 0.73
LIG3P49916 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.6■□□□□ 0.73
LIG3P49916 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.6■□□□□ 0.73
LIG3P49916 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
LIG3P49916 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms