Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.44■□□□□ 0.7
PTPN9P43378 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.43■□□□□ 0.7
PTPN9P43378 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 HOXB1-202ENST00000577092 1414 ntBASIC19.43■□□□□ 0.7
PTPN9P43378 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.43■□□□□ 0.7
PTPN9P43378 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.43■□□□□ 0.7
PTPN9P43378 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.43■□□□□ 0.7
PTPN9P43378 AP000593.1-201ENST00000393668 712 ntBASIC19.43■□□□□ 0.7
PTPN9P43378 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.43■□□□□ 0.7
PTPN9P43378 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.43■□□□□ 0.7
PTPN9P43378 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.43■□□□□ 0.7
PTPN9P43378 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
PTPN9P43378 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
PTPN9P43378 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.43■□□□□ 0.7
PTPN9P43378 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN9P43378 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.42■□□□□ 0.7
PTPN9P43378 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
PTPN9P43378 KRT8P7-201ENST00000533003 1432 ntBASIC19.42■□□□□ 0.7
PTPN9P43378 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
PTPN9P43378 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.42■□□□□ 0.7
PTPN9P43378 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.42■□□□□ 0.7
PTPN9P43378 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.42■□□□□ 0.7
PTPN9P43378 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.42■□□□□ 0.7
PTPN9P43378 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.42■□□□□ 0.7
PTPN9P43378 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
PTPN9P43378 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.42■□□□□ 0.7
PTPN9P43378 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.42■□□□□ 0.7
PTPN9P43378 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.42■□□□□ 0.7
PTPN9P43378 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 AC126763.1-201ENST00000552015 2118 ntBASIC19.42■□□□□ 0.7
PTPN9P43378 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.42■□□□□ 0.7
PTPN9P43378 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN9P43378 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
PTPN9P43378 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
PTPN9P43378 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 AC005082.1-201ENST00000413042 2259 ntBASIC19.41■□□□□ 0.7
PTPN9P43378 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
PTPN9P43378 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
PTPN9P43378 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.41■□□□□ 0.7
PTPN9P43378 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.41■□□□□ 0.7
PTPN9P43378 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.41■□□□□ 0.7
PTPN9P43378 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.41■□□□□ 0.7
PTPN9P43378 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.41■□□□□ 0.7
PTPN9P43378 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 AL512604.3-201ENST00000569583 964 ntBASIC19.41■□□□□ 0.7
PTPN9P43378 AC012306.2-201ENST00000609350 630 ntBASIC19.41■□□□□ 0.7
PTPN9P43378 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
PTPN9P43378 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PTPN9P43378 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms