Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.7■■□□□ 1.07
CTDNEP1O95476 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CTDNEP1O95476 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CTDNEP1O95476 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.7■■□□□ 1.06
CTDNEP1O95476 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.7■■□□□ 1.06
CTDNEP1O95476 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTDNEP1O95476 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTDNEP1O95476 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.7■■□□□ 1.06
CTDNEP1O95476 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTDNEP1O95476 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTDNEP1O95476 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTDNEP1O95476 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTDNEP1O95476 INGX-201ENST00000359239 846 ntBASIC21.7■■□□□ 1.06
CTDNEP1O95476 MIR1238-201ENST00000408483 83 ntBASIC21.7■■□□□ 1.06
CTDNEP1O95476 MCCD1P1-208ENST00000445732 328 ntBASIC21.7■■□□□ 1.06
CTDNEP1O95476 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTDNEP1O95476 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.7■■□□□ 1.06
CTDNEP1O95476 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTDNEP1O95476 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.7■■□□□ 1.06
CTDNEP1O95476 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.7■■□□□ 1.06
CTDNEP1O95476 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.7■■□□□ 1.06
CTDNEP1O95476 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTDNEP1O95476 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTDNEP1O95476 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CTDNEP1O95476 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CTDNEP1O95476 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.69■■□□□ 1.06
CTDNEP1O95476 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CTDNEP1O95476 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDNEP1O95476 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDNEP1O95476 AL390961.4-201ENST00000623958 2535 ntBASIC21.69■■□□□ 1.06
CTDNEP1O95476 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CTDNEP1O95476 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CTDNEP1O95476 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDNEP1O95476 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDNEP1O95476 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDNEP1O95476 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CTDNEP1O95476 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CTDNEP1O95476 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.69■■□□□ 1.06
CTDNEP1O95476 AP003041.3-201ENST00000527151 707 ntBASIC21.69■■□□□ 1.06
CTDNEP1O95476 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CTDNEP1O95476 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.69■■□□□ 1.06
CTDNEP1O95476 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CTDNEP1O95476 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDNEP1O95476 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDNEP1O95476 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CTDNEP1O95476 AC112777.1-201ENST00000540175 1423 ntBASIC21.69■■□□□ 1.06
CTDNEP1O95476 AC092338.2-201ENST00000568827 1415 ntBASIC21.69■■□□□ 1.06
CTDNEP1O95476 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDNEP1O95476 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CTDNEP1O95476 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDNEP1O95476 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CTDNEP1O95476 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDNEP1O95476 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDNEP1O95476 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDNEP1O95476 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
CTDNEP1O95476 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.68■■□□□ 1.06
CTDNEP1O95476 AL596275.1-201ENST00000423464 877 ntBASIC21.68■■□□□ 1.06
CTDNEP1O95476 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.68■■□□□ 1.06
CTDNEP1O95476 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.68■■□□□ 1.06
CTDNEP1O95476 AL353719.1-201ENST00000566847 864 ntBASIC21.68■■□□□ 1.06
CTDNEP1O95476 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.68■■□□□ 1.06
CTDNEP1O95476 CYP2D8P-201ENST00000433633 1490 ntBASIC21.68■■□□□ 1.06
CTDNEP1O95476 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDNEP1O95476 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.68■■□□□ 1.06
CTDNEP1O95476 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDNEP1O95476 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDNEP1O95476 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC21.68■■□□□ 1.06
CTDNEP1O95476 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CTDNEP1O95476 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDNEP1O95476 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDNEP1O95476 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDNEP1O95476 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC21.67■■□□□ 1.06
CTDNEP1O95476 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.67■■□□□ 1.06
CTDNEP1O95476 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CTDNEP1O95476 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC21.67■■□□□ 1.06
CTDNEP1O95476 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.67■■□□□ 1.06
CTDNEP1O95476 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC21.67■■□□□ 1.06
CTDNEP1O95476 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.67■■□□□ 1.06
CTDNEP1O95476 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms