Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP4O75161 TP73-AS1-210ENST00000637775 1455 ntBASIC26.32■■□□□ 1.8
NPHP4O75161 HLA-J-201ENST00000462773 1622 ntBASIC26.32■■□□□ 1.8
NPHP4O75161 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP4O75161 CYP51A1P1-201ENST00000492267 1507 ntBASIC26.32■■□□□ 1.8
NPHP4O75161 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP4O75161 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
NPHP4O75161 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP4O75161 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC26.31■■□□□ 1.8
NPHP4O75161 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC26.31■■□□□ 1.8
NPHP4O75161 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC26.31■■□□□ 1.8
NPHP4O75161 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC26.31■■□□□ 1.8
NPHP4O75161 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP4O75161 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
NPHP4O75161 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC26.31■■□□□ 1.8
NPHP4O75161 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
NPHP4O75161 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP4O75161 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP4O75161 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC26.31■■□□□ 1.8
NPHP4O75161 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
NPHP4O75161 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP4O75161 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP4O75161 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC26.31■■□□□ 1.8
NPHP4O75161 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC26.31■■□□□ 1.8
NPHP4O75161 RFPL4AP1-201ENST00000530883 850 ntBASIC26.31■■□□□ 1.8
NPHP4O75161 PNMT-203ENST00000581428 677 ntTSL 2 BASIC26.31■■□□□ 1.8
NPHP4O75161 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC26.31■■□□□ 1.8
NPHP4O75161 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC26.31■■□□□ 1.8
NPHP4O75161 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP4O75161 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP4O75161 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC26.3■■□□□ 1.8
NPHP4O75161 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC26.3■■□□□ 1.8
NPHP4O75161 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP4O75161 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP4O75161 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP4O75161 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP4O75161 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC26.3■■□□□ 1.8
NPHP4O75161 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP4O75161 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP4O75161 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC26.3■■□□□ 1.8
NPHP4O75161 DDT-206ENST00000430101 573 ntTSL 2 BASIC26.3■■□□□ 1.8
NPHP4O75161 METTL21AP1-201ENST00000438852 635 ntBASIC26.3■■□□□ 1.8
NPHP4O75161 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
NPHP4O75161 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC26.3■■□□□ 1.8
NPHP4O75161 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC26.3■■□□□ 1.8
NPHP4O75161 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP4O75161 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC26.3■■□□□ 1.8
NPHP4O75161 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP4O75161 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP4O75161 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
NPHP4O75161 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP4O75161 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC26.29■■□□□ 1.8
NPHP4O75161 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
NPHP4O75161 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC26.29■■□□□ 1.8
NPHP4O75161 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP4O75161 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP4O75161 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC26.29■■□□□ 1.8
NPHP4O75161 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
NPHP4O75161 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
NPHP4O75161 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP4O75161 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC26.29■■□□□ 1.8
NPHP4O75161 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC26.29■■□□□ 1.8
NPHP4O75161 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC26.29■■□□□ 1.8
NPHP4O75161 AC002347.1-201ENST00000569543 541 ntBASIC26.29■■□□□ 1.8
NPHP4O75161 AL162377.1-201ENST00000618844 1793 ntBASIC26.29■■□□□ 1.8
NPHP4O75161 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC26.28■■□□□ 1.8
NPHP4O75161 AC112777.1-201ENST00000540175 1423 ntBASIC26.28■■□□□ 1.8
NPHP4O75161 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC26.28■■□□□ 1.8
NPHP4O75161 AC026310.3-201ENST00000625186 2373 ntBASIC26.28■■□□□ 1.8
NPHP4O75161 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP4O75161 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP4O75161 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC26.28■■□□□ 1.8
NPHP4O75161 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
NPHP4O75161 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC26.28■■□□□ 1.8
NPHP4O75161 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC26.28■■□□□ 1.8
NPHP4O75161 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP4O75161 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP4O75161 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
NPHP4O75161 AL512408.1-201ENST00000569378 2000 ntBASIC26.27■■□□□ 1.8
NPHP4O75161 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
NPHP4O75161 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NPHP4O75161 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
NPHP4O75161 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NPHP4O75161 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NPHP4O75161 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC26.27■■□□□ 1.8
NPHP4O75161 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NPHP4O75161 RNA5SP416-201ENST00000516838 111 ntBASIC26.27■■□□□ 1.8
NPHP4O75161 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC26.27■■□□□ 1.8
NPHP4O75161 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC26.27■■□□□ 1.8
NPHP4O75161 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NPHP4O75161 AC025062.2-201ENST00000605477 670 ntBASIC26.27■■□□□ 1.8
NPHP4O75161 KRT18P28-201ENST00000453838 1332 ntBASIC26.27■■□□□ 1.8
NPHP4O75161 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC26.27■■□□□ 1.8
NPHP4O75161 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
NPHP4O75161 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP4O75161 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP4O75161 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP4O75161 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC26.26■■□□□ 1.79
NPHP4O75161 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC26.26■■□□□ 1.79
NPHP4O75161 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms