Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 AC236430.1-201ENST00000402231 743 ntBASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 INGX-202ENST00000489074 768 ntBASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CCDC85CA6NKD9 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 BAD-202ENST00000394531 631 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 AC093214.1-201ENST00000511688 1107 ntBASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 AC025678.2-201ENST00000562061 970 ntBASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 MIR6799-201ENST00000620297 69 ntBASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC85CA6NKD9 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 ABCD1P5-201ENST00000445663 754 ntBASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 OARD1-208ENST00000469104 704 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 AC108751.1-201ENST00000490852 363 ntBASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC85CA6NKD9 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 PUS1-205ENST00000535067 838 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 AL031432.2-201ENST00000566714 459 ntBASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 AL928711.1-201ENST00000570165 459 ntBASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 AC005593.1-201ENST00000624894 515 ntBASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC85CA6NKD9 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 FEM1AP1-201ENST00000431297 1995 ntBASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 INTS4P1-201ENST00000438455 1935 ntBASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 AC112777.1-201ENST00000540175 1423 ntBASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC85CA6NKD9 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC85CA6NKD9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
CCDC85CA6NKD9 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms