Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 AC093525.10-201ENST00000625130 1569 ntBASIC19.6■□□□□ 0.73
USP3Q9Y6I4 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 AL357033.4-201ENST00000617703 1807 ntBASIC19.6■□□□□ 0.73
USP3Q9Y6I4 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP3Q9Y6I4 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
USP3Q9Y6I4 AC034236.2-201ENST00000606662 1610 ntBASIC19.58■□□□□ 0.73
USP3Q9Y6I4 AL020996.1-203ENST00000536896 2307 ntBASIC19.58■□□□□ 0.73
USP3Q9Y6I4 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
USP3Q9Y6I4 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.73
USP3Q9Y6I4 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP3Q9Y6I4 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 HOMER2P1-201ENST00000455653 964 ntBASIC19.58■□□□□ 0.72
USP3Q9Y6I4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 SEC1P-202ENST00000473944 940 ntBASIC19.58■□□□□ 0.72
USP3Q9Y6I4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 AC112497.1-201ENST00000624824 639 ntBASIC19.58■□□□□ 0.72
USP3Q9Y6I4 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.58■□□□□ 0.72
USP3Q9Y6I4 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 AL031598.1-201ENST00000561511 1773 ntBASIC19.57■□□□□ 0.72
USP3Q9Y6I4 Z98044.1-201ENST00000632503 1764 ntBASIC19.57■□□□□ 0.72
USP3Q9Y6I4 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.57■□□□□ 0.72
USP3Q9Y6I4 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 AC024243.1-201ENST00000609234 778 ntBASIC19.57■□□□□ 0.72
USP3Q9Y6I4 MYC-208ENST00000641036 567 ntBASIC19.57■□□□□ 0.72
USP3Q9Y6I4 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP3Q9Y6I4 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms