Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 SLC25A1P1-201ENST00000528351 927 ntBASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 AC024243.1-201ENST00000609234 778 ntBASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC35.57■■■■□ 3.29
SHROOM4Q9ULL8 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC35.57■■■■□ 3.29
SHROOM4Q9ULL8 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC35.57■■■■□ 3.29
SHROOM4Q9ULL8 TLE1-202ENST00000376484 666 ntTSL 3 BASIC35.57■■■■□ 3.28
SHROOM4Q9ULL8 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC35.57■■■■□ 3.28
SHROOM4Q9ULL8 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC35.57■■■■□ 3.28
SHROOM4Q9ULL8 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC35.57■■■■□ 3.28
SHROOM4Q9ULL8 AP001005.1-201ENST00000571755 1248 ntBASIC35.57■■■■□ 3.28
SHROOM4Q9ULL8 NAA38-203ENST00000575071 553 ntTSL 2 BASIC35.57■■■■□ 3.28
SHROOM4Q9ULL8 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC35.57■■■■□ 3.28
SHROOM4Q9ULL8 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC35.57■■■■□ 3.28
SHROOM4Q9ULL8 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.28
SHROOM4Q9ULL8 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC35.57■■■■□ 3.28
SHROOM4Q9ULL8 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC35.56■■■■□ 3.28
SHROOM4Q9ULL8 TK1-205ENST00000590862 642 ntTSL 3 BASIC35.56■■■■□ 3.28
SHROOM4Q9ULL8 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC35.56■■■■□ 3.28
SHROOM4Q9ULL8 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC35.56■■■■□ 3.28
SHROOM4Q9ULL8 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC35.56■■■■□ 3.28
SHROOM4Q9ULL8 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC35.56■■■■□ 3.28
SHROOM4Q9ULL8 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC35.56■■■■□ 3.28
SHROOM4Q9ULL8 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC35.56■■■■□ 3.28
SHROOM4Q9ULL8 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC35.56■■■■□ 3.28
SHROOM4Q9ULL8 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC35.56■■■■□ 3.28
SHROOM4Q9ULL8 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC35.55■■■■□ 3.28
SHROOM4Q9ULL8 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC35.55■■■■□ 3.28
SHROOM4Q9ULL8 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC35.55■■■■□ 3.28
SHROOM4Q9ULL8 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC35.55■■■■□ 3.28
SHROOM4Q9ULL8 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC35.55■■■■□ 3.28
SHROOM4Q9ULL8 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC35.55■■■■□ 3.28
SHROOM4Q9ULL8 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC35.55■■■■□ 3.28
SHROOM4Q9ULL8 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC35.55■■■■□ 3.28
SHROOM4Q9ULL8 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC35.54■■■■□ 3.28
SHROOM4Q9ULL8 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC35.54■■■■□ 3.28
SHROOM4Q9ULL8 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC35.54■■■■□ 3.28
SHROOM4Q9ULL8 RNF126P1-202ENST00000569893 925 ntBASIC35.54■■■■□ 3.28
SHROOM4Q9ULL8 AF228730.7-201ENST00000641842 219 ntBASIC35.54■■■■□ 3.28
SHROOM4Q9ULL8 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC35.54■■■■□ 3.28
SHROOM4Q9ULL8 POLI-202ENST00000406285 2030 ntTSL 2 BASIC35.54■■■■□ 3.28
SHROOM4Q9ULL8 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC35.54■■■■□ 3.28
SHROOM4Q9ULL8 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
SHROOM4Q9ULL8 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC35.54■■■■□ 3.28
SHROOM4Q9ULL8 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
SHROOM4Q9ULL8 AC138894.3-201ENST00000603787 634 ntBASIC35.54■■■■□ 3.28
SHROOM4Q9ULL8 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 AL773604.1-201ENST00000617417 272 ntBASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SHROOM4Q9ULL8 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC35.52■■■■□ 3.28
SHROOM4Q9ULL8 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.28
SHROOM4Q9ULL8 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.28
SHROOM4Q9ULL8 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC35.51■■■■□ 3.28
SHROOM4Q9ULL8 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC35.51■■■■□ 3.28
SHROOM4Q9ULL8 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC35.51■■■■□ 3.28
SHROOM4Q9ULL8 HMGN1P19-201ENST00000436976 333 ntBASIC35.51■■■■□ 3.28
SHROOM4Q9ULL8 TPM1-218ENST00000559281 851 ntTSL 5 BASIC35.51■■■■□ 3.28
SHROOM4Q9ULL8 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms