Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.18
CHMP1AQ9HD42 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 TUBB8P6-201ENST00000436895 1288 ntBASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 RHEB-204ENST00000472642 900 ntTSL 3 BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHMP1AQ9HD42 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 OR2A1-AS1-207ENST00000486094 819 ntBASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 HLA-B-256ENST00000639848 1089 ntBASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 FP475955.4-201ENST00000623131 1990 ntBASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHMP1AQ9HD42 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 PPP1R14BP2-201ENST00000426284 444 ntBASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 PNMA6B-201ENST00000538162 1200 ntBASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms