Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 KRT18P2-201ENST00000447938 1258 ntBASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.68■□□□□ 0.58
LRFN3Q9BTN0 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRFN3Q9BTN0 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 AC005498.2-205ENST00000593218 784 ntBASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 AL356309.3-201ENST00000624132 1934 ntBASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 AC002310.6-201ENST00000624451 1377 ntBASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LRFN3Q9BTN0 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 AP001271.2-201ENST00000624018 1556 ntBASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 FEM1AP1-201ENST00000431297 1995 ntBASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 AL139400.1-201ENST00000366220 510 ntBASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 GAPDHP21-201ENST00000450301 1010 ntBASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 CEND1P1-201ENST00000451006 455 ntBASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN3Q9BTN0 ELL2P1-201ENST00000413990 1906 ntBASIC18.64■□□□□ 0.58
LRFN3Q9BTN0 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
LRFN3Q9BTN0 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
LRFN3Q9BTN0 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.64■□□□□ 0.58
LRFN3Q9BTN0 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN3Q9BTN0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LRFN3Q9BTN0 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN3Q9BTN0 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms