Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 RCC2P6-201ENST00000526625 1557 ntBASIC18.82■□□□□ 0.6
VPS39Q96JC1 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 RN7SL471P-201ENST00000580476 299 ntBASIC18.82■□□□□ 0.6
VPS39Q96JC1 AC131212.4-201ENST00000623606 975 ntBASIC18.82■□□□□ 0.6
VPS39Q96JC1 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 AC079598.2-202ENST00000546624 1451 ntBASIC18.82■□□□□ 0.6
VPS39Q96JC1 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS39Q96JC1 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VPS39Q96JC1 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
VPS39Q96JC1 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS39Q96JC1 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS39Q96JC1 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS39Q96JC1 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VPS39Q96JC1 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS39Q96JC1 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS39Q96JC1 NIFKP9-201ENST00000419265 221 ntBASIC18.81■□□□□ 0.6
VPS39Q96JC1 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS39Q96JC1 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VPS39Q96JC1 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS39Q96JC1 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.81■□□□□ 0.6
VPS39Q96JC1 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS39Q96JC1 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS39Q96JC1 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS39Q96JC1 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS39Q96JC1 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS39Q96JC1 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS39Q96JC1 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
VPS39Q96JC1 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS39Q96JC1 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS39Q96JC1 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS39Q96JC1 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS39Q96JC1 AC004980.1-204ENST00000429707 299 ntBASIC18.8■□□□□ 0.6
VPS39Q96JC1 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS39Q96JC1 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VPS39Q96JC1 AC006058.3-201ENST00000606217 1069 ntBASIC18.8■□□□□ 0.6
VPS39Q96JC1 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.8■□□□□ 0.6
VPS39Q96JC1 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
VPS39Q96JC1 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS39Q96JC1 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS39Q96JC1 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS39Q96JC1 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS39Q96JC1 AC126763.1-201ENST00000552015 2118 ntBASIC18.8■□□□□ 0.6
VPS39Q96JC1 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS39Q96JC1 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS39Q96JC1 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS39Q96JC1 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS39Q96JC1 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
VPS39Q96JC1 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS39Q96JC1 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
VPS39Q96JC1 AP002982.1-201ENST00000492365 877 ntBASIC18.79■□□□□ 0.6
VPS39Q96JC1 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS39Q96JC1 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms