Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC006333.2-201ENST00000607957 2099 ntBASIC19.23■□□□□ 0.67
SKA1Q96BD8 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SKA1Q96BD8 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.22■□□□□ 0.67
SKA1Q96BD8 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA1Q96BD8 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SKA1Q96BD8 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SKA1Q96BD8 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SKA1Q96BD8 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA1Q96BD8 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA1Q96BD8 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA1Q96BD8 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA1Q96BD8 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SKA1Q96BD8 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA1Q96BD8 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.21■□□□□ 0.67
SKA1Q96BD8 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SKA1Q96BD8 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA1Q96BD8 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
SKA1Q96BD8 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.2■□□□□ 0.66
SKA1Q96BD8 AC120498.9-201ENST00000339021 3867 ntBASIC19.2■□□□□ 0.66
SKA1Q96BD8 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SKA1Q96BD8 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SKA1Q96BD8 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 TSPY17P-201ENST00000450329 467 ntBASIC19.2■□□□□ 0.66
SKA1Q96BD8 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SKA1Q96BD8 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SKA1Q96BD8 FAM87A-204ENST00000613235 858 ntBASIC19.2■□□□□ 0.66
SKA1Q96BD8 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SKA1Q96BD8 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.2■□□□□ 0.66
SKA1Q96BD8 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SKA1Q96BD8 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.2■□□□□ 0.66
SKA1Q96BD8 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SKA1Q96BD8 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA1Q96BD8 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SKA1Q96BD8 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA1Q96BD8 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA1Q96BD8 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.19■□□□□ 0.66
SKA1Q96BD8 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms