Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.27■□□□□ 0.51
LMX1AQ8TE12 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
LMX1AQ8TE12 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.27■□□□□ 0.51
LMX1AQ8TE12 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
LMX1AQ8TE12 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.27■□□□□ 0.51
LMX1AQ8TE12 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 AL162741.1-201ENST00000565563 1558 ntBASIC18.26■□□□□ 0.51
LMX1AQ8TE12 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 MIR564-202ENST00000385049 94 ntBASIC18.26■□□□□ 0.51
LMX1AQ8TE12 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 HLA-F-220ENST00000434407 884 ntBASIC18.26■□□□□ 0.51
LMX1AQ8TE12 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 AC092329.2-201ENST00000598402 547 ntBASIC18.26■□□□□ 0.51
LMX1AQ8TE12 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1AQ8TE12 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 KRT8P7-201ENST00000533003 1432 ntBASIC18.25■□□□□ 0.51
LMX1AQ8TE12 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 AC010240.3-201ENST00000607688 395 ntBASIC18.25■□□□□ 0.51
LMX1AQ8TE12 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 AC016734.2-201ENST00000624325 1377 ntBASIC18.25■□□□□ 0.51
LMX1AQ8TE12 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 KRT8P32-201ENST00000512863 1461 ntBASIC18.25■□□□□ 0.51
LMX1AQ8TE12 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.25■□□□□ 0.51
LMX1AQ8TE12 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 FP475955.4-201ENST00000623131 1990 ntBASIC18.24■□□□□ 0.51
LMX1AQ8TE12 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 AC141586.3-201ENST00000562166 1838 ntBASIC18.24■□□□□ 0.51
LMX1AQ8TE12 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 AC104390.1-201ENST00000555663 520 ntBASIC18.24■□□□□ 0.51
LMX1AQ8TE12 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1AQ8TE12 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 HOXB1-202ENST00000577092 1414 ntBASIC18.23■□□□□ 0.51
LMX1AQ8TE12 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms