Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 AC092183.1-201ENST00000469884 875 ntBASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 AL390719.2-201ENST00000606993 987 ntBASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 AL139424.1-201ENST00000607572 797 ntBASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC88AQ3V6T2 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 AC106730.1-201ENST00000566722 1090 ntBASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 ENSA-205ENST00000361532 792 ntTSL 2 BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 MCCD1P1-208ENST00000445732 328 ntBASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 AC124864.1-201ENST00000623408 392 ntBASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC88AQ3V6T2 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 AL023284.2-201ENST00000405850 579 ntBASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 TPM1-218ENST00000559281 851 ntTSL 5 BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 AC090616.6-201ENST00000582640 721 ntBASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 ME2-218ENST00000640965 2476 ntTSL 5 BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC88AQ3V6T2 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms