Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC007663.1-201ENST00000438948 1240 ntBASIC17.8■□□□□ 0.44
LIM2P55344 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIM2P55344 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.8■□□□□ 0.44
LIM2P55344 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIM2P55344 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.8■□□□□ 0.44
LIM2P55344 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.8■□□□□ 0.44
LIM2P55344 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LIM2P55344 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIM2P55344 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIM2P55344 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIM2P55344 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.8■□□□□ 0.44
LIM2P55344 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.8■□□□□ 0.44
LIM2P55344 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIM2P55344 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIM2P55344 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.8■□□□□ 0.44
LIM2P55344 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIM2P55344 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIM2P55344 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIM2P55344 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.79■□□□□ 0.44
LIM2P55344 RCC2P3-201ENST00000418112 1537 ntBASIC17.79■□□□□ 0.44
LIM2P55344 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LIM2P55344 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIM2P55344 INGX-201ENST00000359239 846 ntBASIC17.79■□□□□ 0.44
LIM2P55344 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.79■□□□□ 0.44
LIM2P55344 AC128688.1-201ENST00000487626 519 ntBASIC17.79■□□□□ 0.44
LIM2P55344 AP003041.3-201ENST00000527151 707 ntBASIC17.79■□□□□ 0.44
LIM2P55344 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.79■□□□□ 0.44
LIM2P55344 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIM2P55344 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.79■□□□□ 0.44
LIM2P55344 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.79■□□□□ 0.44
LIM2P55344 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
LIM2P55344 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.79■□□□□ 0.44
LIM2P55344 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
LIM2P55344 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIM2P55344 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIM2P55344 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.79■□□□□ 0.44
LIM2P55344 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIM2P55344 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIM2P55344 LINC01568-207ENST00000641790 1380 ntBASIC17.79■□□□□ 0.44
LIM2P55344 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIM2P55344 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.78■□□□□ 0.44
LIM2P55344 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIM2P55344 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
LIM2P55344 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
LIM2P55344 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.78■□□□□ 0.44
LIM2P55344 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIM2P55344 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.78■□□□□ 0.44
LIM2P55344 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIM2P55344 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
LIM2P55344 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.78■□□□□ 0.44
LIM2P55344 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.78■□□□□ 0.44
LIM2P55344 GPAT2P1-201ENST00000444924 1672 ntBASIC17.78■□□□□ 0.44
LIM2P55344 HEIH-201ENST00000623091 1652 ntBASIC17.78■□□□□ 0.44
LIM2P55344 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIM2P55344 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIM2P55344 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIM2P55344 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIM2P55344 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIM2P55344 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIM2P55344 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.78■□□□□ 0.44
LIM2P55344 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.78■□□□□ 0.44
LIM2P55344 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIM2P55344 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.78■□□□□ 0.44
LIM2P55344 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.78■□□□□ 0.44
LIM2P55344 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.78■□□□□ 0.44
LIM2P55344 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.78■□□□□ 0.44
LIM2P55344 AC068587.9-201ENST00000641814 219 ntBASIC17.78■□□□□ 0.44
LIM2P55344 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIM2P55344 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.78■□□□□ 0.44
LIM2P55344 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
LIM2P55344 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
LIM2P55344 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
LIM2P55344 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.78■□□□□ 0.44
LIM2P55344 AC009113.1-201ENST00000570267 2443 ntBASIC17.78■□□□□ 0.44
LIM2P55344 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
LIM2P55344 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIM2P55344 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIM2P55344 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.77■□□□□ 0.44
LIM2P55344 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.77■□□□□ 0.44
LIM2P55344 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
LIM2P55344 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIM2P55344 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIM2P55344 AL023284.2-201ENST00000405850 579 ntBASIC17.77■□□□□ 0.44
LIM2P55344 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
LIM2P55344 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.77■□□□□ 0.44
LIM2P55344 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.77■□□□□ 0.44
LIM2P55344 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.77■□□□□ 0.44
LIM2P55344 MIR4674-201ENST00000582457 87 ntBASIC17.77■□□□□ 0.44
LIM2P55344 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIM2P55344 AC010653.2-201ENST00000623505 997 ntBASIC17.77■□□□□ 0.44
LIM2P55344 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIM2P55344 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.77■□□□□ 0.44
LIM2P55344 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
LIM2P55344 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIM2P55344 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIM2P55344 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIM2P55344 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIM2P55344 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
LIM2P55344 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIM2P55344 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms