Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.52■□□□□ 0.56
LIMK1P53667 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIMK1P53667 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIMK1P53667 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIMK1P53667 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIMK1P53667 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.52■□□□□ 0.55
LIMK1P53667 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIMK1P53667 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.51■□□□□ 0.55
LIMK1P53667 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
LIMK1P53667 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK1P53667 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.51■□□□□ 0.55
LIMK1P53667 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LIMK1P53667 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK1P53667 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.51■□□□□ 0.55
LIMK1P53667 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.51■□□□□ 0.55
LIMK1P53667 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
LIMK1P53667 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK1P53667 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.51■□□□□ 0.55
LIMK1P53667 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.51■□□□□ 0.55
LIMK1P53667 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
LIMK1P53667 AC024243.1-201ENST00000609234 778 ntBASIC18.51■□□□□ 0.55
LIMK1P53667 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.51■□□□□ 0.55
LIMK1P53667 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.51■□□□□ 0.55
LIMK1P53667 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK1P53667 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK1P53667 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK1P53667 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK1P53667 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK1P53667 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
LIMK1P53667 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
LIMK1P53667 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LIMK1P53667 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 KRT18P58-201ENST00000527480 1120 ntBASIC18.5■□□□□ 0.55
LIMK1P53667 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMK1P53667 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
LIMK1P53667 AC079602.3-201ENST00000623931 403 ntBASIC18.5■□□□□ 0.55
LIMK1P53667 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMK1P53667 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LIMK1P53667 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK1P53667 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.5■□□□□ 0.55
LIMK1P53667 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LIMK1P53667 IL9RP2-201ENST00000423948 1312 ntBASIC18.49■□□□□ 0.55
LIMK1P53667 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMK1P53667 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
LIMK1P53667 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.49■□□□□ 0.55
LIMK1P53667 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.49■□□□□ 0.55
LIMK1P53667 AP001005.1-201ENST00000571755 1248 ntBASIC18.49■□□□□ 0.55
LIMK1P53667 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 AL136038.4-201ENST00000603606 1261 ntBASIC18.49■□□□□ 0.55
LIMK1P53667 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMK1P53667 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.49■□□□□ 0.55
LIMK1P53667 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMK1P53667 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LIMK1P53667 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
LIMK1P53667 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
LIMK1P53667 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK1P53667 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
LIMK1P53667 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.48■□□□□ 0.55
LIMK1P53667 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.48■□□□□ 0.55
LIMK1P53667 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIMK1P53667 AC125437.2-201ENST00000625180 2167 ntBASIC18.48■□□□□ 0.55
LIMK1P53667 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.48■□□□□ 0.55
LIMK1P53667 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMK1P53667 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMK1P53667 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIMK1P53667 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms