Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A1P12109 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A1P12109 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A1P12109 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A1P12109 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A1P12109 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A1P12109 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A1P12109 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A1P12109 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.67■□□□□ 0.9
COL6A1P12109 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.67■□□□□ 0.9
COL6A1P12109 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.67■□□□□ 0.9
COL6A1P12109 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A1P12109 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.67■□□□□ 0.9
COL6A1P12109 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.67■□□□□ 0.9
COL6A1P12109 AC139887.3-201ENST00000568585 713 ntBASIC20.67■□□□□ 0.9
COL6A1P12109 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.67■□□□□ 0.9
COL6A1P12109 BNIP3P18-201ENST00000593976 575 ntBASIC20.67■□□□□ 0.9
COL6A1P12109 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A1P12109 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A1P12109 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.67■□□□□ 0.9
COL6A1P12109 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.67■□□□□ 0.9
COL6A1P12109 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.67■□□□□ 0.9
COL6A1P12109 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 AC008556.1-201ENST00000610908 2040 ntBASIC20.66■□□□□ 0.9
COL6A1P12109 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
COL6A1P12109 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.66■□□□□ 0.9
COL6A1P12109 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.66■□□□□ 0.9
COL6A1P12109 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.66■□□□□ 0.9
COL6A1P12109 MINOS1P3-201ENST00000457048 203 ntBASIC20.66■□□□□ 0.9
COL6A1P12109 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.66■□□□□ 0.9
COL6A1P12109 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.66■□□□□ 0.9
COL6A1P12109 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.66■□□□□ 0.9
COL6A1P12109 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
COL6A1P12109 MIR5100-201ENST00000579544 119 ntBASIC20.66■□□□□ 0.9
COL6A1P12109 MIR3180-4-201ENST00000582223 153 ntBASIC20.66■□□□□ 0.9
COL6A1P12109 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.66■□□□□ 0.9
COL6A1P12109 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.66■□□□□ 0.9
COL6A1P12109 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.66■□□□□ 0.9
COL6A1P12109 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
COL6A1P12109 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
COL6A1P12109 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.66■□□□□ 0.9
COL6A1P12109 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
COL6A1P12109 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A1P12109 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.66■□□□□ 0.9
COL6A1P12109 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
COL6A1P12109 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL6A1P12109 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
COL6A1P12109 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A1P12109 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.65■□□□□ 0.9
COL6A1P12109 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A1P12109 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A1P12109 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A1P12109 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.65■□□□□ 0.9
COL6A1P12109 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A1P12109 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A1P12109 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A1P12109 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
COL6A1P12109 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
COL6A1P12109 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A1P12109 AC073648.2-201ENST00000510116 352 ntBASIC20.65■□□□□ 0.9
COL6A1P12109 PGAM5P1-201ENST00000518923 814 ntBASIC20.65■□□□□ 0.9
COL6A1P12109 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.65■□□□□ 0.9
COL6A1P12109 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.65■□□□□ 0.9
COL6A1P12109 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.65■□□□□ 0.9
COL6A1P12109 AL591684.3-201ENST00000605187 298 ntBASIC20.65■□□□□ 0.9
COL6A1P12109 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A1P12109 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.65■□□□□ 0.9
COL6A1P12109 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A1P12109 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A1P12109 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A1P12109 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A1P12109 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
COL6A1P12109 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL6A1P12109 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.64■□□□□ 0.9
COL6A1P12109 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A1P12109 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A1P12109 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A1P12109 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A1P12109 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.64■□□□□ 0.89
COL6A1P12109 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.64■□□□□ 0.89
COL6A1P12109 MIR940-201ENST00000401276 94 ntBASIC20.64■□□□□ 0.89
COL6A1P12109 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
COL6A1P12109 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.64■□□□□ 0.89
COL6A1P12109 AC024563.2-201ENST00000603282 481 ntBASIC20.64■□□□□ 0.89
COL6A1P12109 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A1P12109 AC055717.3-201ENST00000622967 595 ntBASIC20.64■□□□□ 0.89
COL6A1P12109 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms