Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
COL3A1P02461 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC24.78■■□□□ 1.56
COL3A1P02461 MIR3180-4-201ENST00000582223 153 ntBASIC24.78■■□□□ 1.56
COL3A1P02461 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC24.78■■□□□ 1.56
COL3A1P02461 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC24.78■■□□□ 1.56
COL3A1P02461 AP000550.4-202ENST00000639755 178 ntBASIC24.78■■□□□ 1.56
COL3A1P02461 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
COL3A1P02461 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC24.78■■□□□ 1.56
COL3A1P02461 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
COL3A1P02461 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
COL3A1P02461 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
COL3A1P02461 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
COL3A1P02461 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
COL3A1P02461 AL391807.1-203ENST00000604392 2365 ntBASIC24.78■■□□□ 1.56
COL3A1P02461 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC24.77■■□□□ 1.56
COL3A1P02461 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
COL3A1P02461 AL031598.1-201ENST00000561511 1773 ntBASIC24.77■■□□□ 1.56
COL3A1P02461 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
COL3A1P02461 PCED1CP-201ENST00000419887 785 ntBASIC24.77■■□□□ 1.56
COL3A1P02461 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
COL3A1P02461 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC24.77■■□□□ 1.56
COL3A1P02461 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC24.77■■□□□ 1.56
COL3A1P02461 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
COL3A1P02461 UROS-202ENST00000368778 1556 ntTSL 2 BASIC24.77■■□□□ 1.56
COL3A1P02461 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
COL3A1P02461 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
COL3A1P02461 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
COL3A1P02461 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
COL3A1P02461 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
COL3A1P02461 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
COL3A1P02461 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC24.77■■□□□ 1.56
COL3A1P02461 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC24.77■■□□□ 1.56
COL3A1P02461 AL645929.1-201ENST00000420084 975 ntBASIC24.77■■□□□ 1.56
COL3A1P02461 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
COL3A1P02461 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC24.77■■□□□ 1.56
COL3A1P02461 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
COL3A1P02461 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
COL3A1P02461 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC24.77■■□□□ 1.56
COL3A1P02461 TEN1-204ENST00000588202 862 ntTSL 3 BASIC24.77■■□□□ 1.56
COL3A1P02461 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC24.76■■□□□ 1.55
COL3A1P02461 COBL-210ENST00000632460 1941 ntTSL 5 BASIC24.76■■□□□ 1.55
COL3A1P02461 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
COL3A1P02461 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
COL3A1P02461 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC24.76■■□□□ 1.55
COL3A1P02461 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
COL3A1P02461 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
COL3A1P02461 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
COL3A1P02461 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
COL3A1P02461 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC24.76■■□□□ 1.55
COL3A1P02461 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
COL3A1P02461 AP000593.1-201ENST00000393668 712 ntBASIC24.76■■□□□ 1.55
COL3A1P02461 PVRIG2P-201ENST00000435460 978 ntBASIC24.76■■□□□ 1.55
COL3A1P02461 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
COL3A1P02461 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC24.76■■□□□ 1.55
COL3A1P02461 DBP-204ENST00000599385 709 ntTSL 3 BASIC24.76■■□□□ 1.55
COL3A1P02461 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC24.76■■□□□ 1.55
COL3A1P02461 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
COL3A1P02461 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
COL3A1P02461 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
COL3A1P02461 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC24.75■■□□□ 1.55
COL3A1P02461 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC24.75■■□□□ 1.55
COL3A1P02461 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
COL3A1P02461 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC24.75■■□□□ 1.55
COL3A1P02461 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC24.75■■□□□ 1.55
COL3A1P02461 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC24.75■■□□□ 1.55
COL3A1P02461 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC24.75■■□□□ 1.55
COL3A1P02461 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
COL3A1P02461 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC24.75■■□□□ 1.55
COL3A1P02461 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
COL3A1P02461 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC24.75■■□□□ 1.55
COL3A1P02461 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
COL3A1P02461 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
COL3A1P02461 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC24.74■■□□□ 1.55
COL3A1P02461 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC24.74■■□□□ 1.55
COL3A1P02461 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
COL3A1P02461 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC24.74■■□□□ 1.55
COL3A1P02461 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
COL3A1P02461 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC24.74■■□□□ 1.55
COL3A1P02461 FXN-203ENST00000396366 922 ntTSL 2 BASIC24.74■■□□□ 1.55
COL3A1P02461 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC24.74■■□□□ 1.55
COL3A1P02461 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
COL3A1P02461 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
COL3A1P02461 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC24.74■■□□□ 1.55
COL3A1P02461 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
COL3A1P02461 IER3-202ENST00000376377 1350 ntBASIC24.74■■□□□ 1.55
COL3A1P02461 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
COL3A1P02461 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC24.73■■□□□ 1.55
COL3A1P02461 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC24.73■■□□□ 1.55
COL3A1P02461 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
COL3A1P02461 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC24.73■■□□□ 1.55
COL3A1P02461 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
COL3A1P02461 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC24.73■■□□□ 1.55
COL3A1P02461 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC24.73■■□□□ 1.55
COL3A1P02461 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
COL3A1P02461 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC24.73■■□□□ 1.55
COL3A1P02461 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC24.73■■□□□ 1.55
COL3A1P02461 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
COL3A1P02461 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
COL3A1P02461 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC24.73■■□□□ 1.55
COL3A1P02461 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms