Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
NPHP4O75161 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NPHP4O75161 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NPHP4O75161 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NPHP4O75161 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC26.38■■□□□ 1.81
NPHP4O75161 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC26.38■■□□□ 1.81
NPHP4O75161 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
NPHP4O75161 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
NPHP4O75161 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC26.38■■□□□ 1.81
NPHP4O75161 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
NPHP4O75161 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC26.38■■□□□ 1.81
NPHP4O75161 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NPHP4O75161 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP4O75161 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP4O75161 DET1-207ENST00000564406 2315 ntTSL 2 BASIC26.37■■□□□ 1.81
NPHP4O75161 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP4O75161 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP4O75161 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC26.37■■□□□ 1.81
NPHP4O75161 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP4O75161 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP4O75161 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP4O75161 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP4O75161 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC26.37■■□□□ 1.81
NPHP4O75161 AC012640.2-201ENST00000561606 901 ntBASIC26.37■■□□□ 1.81
NPHP4O75161 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP4O75161 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP4O75161 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP4O75161 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP4O75161 AC034236.2-201ENST00000606662 1610 ntBASIC26.36■■□□□ 1.81
NPHP4O75161 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP4O75161 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC26.36■■□□□ 1.81
NPHP4O75161 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
NPHP4O75161 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP4O75161 AC004832.2-201ENST00000426397 482 ntBASIC26.36■■□□□ 1.81
NPHP4O75161 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC26.36■■□□□ 1.81
NPHP4O75161 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC26.36■■□□□ 1.81
NPHP4O75161 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
NPHP4O75161 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC26.36■■□□□ 1.81
NPHP4O75161 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
NPHP4O75161 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC26.35■■□□□ 1.81
NPHP4O75161 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
NPHP4O75161 PMP22-202ENST00000395936 816 ntTSL 3 BASIC26.35■■□□□ 1.81
NPHP4O75161 LBH-203ENST00000404397 543 ntTSL 4 BASIC26.35■■□□□ 1.81
NPHP4O75161 RPS2P1-201ENST00000434010 821 ntBASIC26.35■■□□□ 1.81
NPHP4O75161 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP4O75161 AC092910.1-201ENST00000482027 1129 ntBASIC26.35■■□□□ 1.81
NPHP4O75161 RNA5SP415-201ENST00000517246 115 ntBASIC26.35■■□□□ 1.81
NPHP4O75161 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP4O75161 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP4O75161 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP4O75161 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP4O75161 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP4O75161 AC006333.2-201ENST00000607957 2099 ntBASIC26.35■■□□□ 1.81
NPHP4O75161 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP4O75161 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
NPHP4O75161 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP4O75161 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP4O75161 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP4O75161 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP4O75161 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC26.34■■□□□ 1.81
NPHP4O75161 SART3-203ENST00000546611 1184 ntBASIC26.34■■□□□ 1.81
NPHP4O75161 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC26.34■■□□□ 1.81
NPHP4O75161 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
NPHP4O75161 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP4O75161 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC26.34■■□□□ 1.81
NPHP4O75161 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP4O75161 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC26.34■■□□□ 1.81
NPHP4O75161 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP4O75161 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
NPHP4O75161 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
NPHP4O75161 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC26.33■■□□□ 1.81
NPHP4O75161 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC26.33■■□□□ 1.81
NPHP4O75161 COA5-202ENST00000409997 557 ntTSL 4 BASIC26.33■■□□□ 1.81
NPHP4O75161 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC26.33■■□□□ 1.81
NPHP4O75161 AP006288.1-201ENST00000446065 395 ntBASIC26.33■■□□□ 1.81
NPHP4O75161 HS6ST1P1-201ENST00000481504 1234 ntBASIC26.33■■□□□ 1.81
NPHP4O75161 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC26.33■■□□□ 1.81
NPHP4O75161 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC26.33■■□□□ 1.81
NPHP4O75161 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC26.33■■□□□ 1.81
NPHP4O75161 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC26.33■■□□□ 1.81
NPHP4O75161 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC26.33■■□□□ 1.81
NPHP4O75161 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC26.33■■□□□ 1.81
NPHP4O75161 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NPHP4O75161 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NPHP4O75161 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
NPHP4O75161 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
NPHP4O75161 KATNBL1P6-202ENST00000562413 1466 ntBASIC26.33■■□□□ 1.81
NPHP4O75161 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
NPHP4O75161 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
NPHP4O75161 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.8
NPHP4O75161 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP4O75161 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP4O75161 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP4O75161 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
NPHP4O75161 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP4O75161 CYMP-203ENST00000474680 1263 ntBASIC26.32■■□□□ 1.8
NPHP4O75161 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC26.32■■□□□ 1.8
NPHP4O75161 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC26.32■■□□□ 1.8
NPHP4O75161 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC26.32■■□□□ 1.8
NPHP4O75161 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC26.32■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms