Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HDAC3O15379 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDAC3O15379 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDAC3O15379 KRT8P41-201ENST00000533985 1514 ntBASIC18.28■□□□□ 0.52
HDAC3O15379 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
HDAC3O15379 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HDAC3O15379 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.28■□□□□ 0.52
HDAC3O15379 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDAC3O15379 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDAC3O15379 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
HDAC3O15379 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.27■□□□□ 0.52
HDAC3O15379 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
HDAC3O15379 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HDAC3O15379 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
HDAC3O15379 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HDAC3O15379 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HDAC3O15379 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HDAC3O15379 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.27■□□□□ 0.52
HDAC3O15379 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.27■□□□□ 0.52
HDAC3O15379 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HDAC3O15379 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
HDAC3O15379 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HDAC3O15379 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HDAC3O15379 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HDAC3O15379 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
HDAC3O15379 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.27■□□□□ 0.52
HDAC3O15379 MYC-208ENST00000641036 567 ntBASIC18.27■□□□□ 0.52
HDAC3O15379 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HDAC3O15379 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HDAC3O15379 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
HDAC3O15379 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HDAC3O15379 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
HDAC3O15379 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.27■□□□□ 0.51
HDAC3O15379 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HDAC3O15379 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HDAC3O15379 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HDAC3O15379 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.26■□□□□ 0.51
HDAC3O15379 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
HDAC3O15379 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 TSPY6P-201ENST00000448518 926 ntBASIC18.26■□□□□ 0.51
HDAC3O15379 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.26■□□□□ 0.51
HDAC3O15379 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.26■□□□□ 0.51
HDAC3O15379 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.26■□□□□ 0.51
HDAC3O15379 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
HDAC3O15379 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HDAC3O15379 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.26■□□□□ 0.51
HDAC3O15379 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDAC3O15379 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.25■□□□□ 0.51
HDAC3O15379 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.25■□□□□ 0.51
HDAC3O15379 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.25■□□□□ 0.51
HDAC3O15379 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.25■□□□□ 0.51
HDAC3O15379 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
HDAC3O15379 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.25■□□□□ 0.51
HDAC3O15379 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
HDAC3O15379 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
HDAC3O15379 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.25■□□□□ 0.51
HDAC3O15379 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
HDAC3O15379 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.25■□□□□ 0.51
HDAC3O15379 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.25■□□□□ 0.51
HDAC3O15379 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
HDAC3O15379 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
HDAC3O15379 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.25■□□□□ 0.51
HDAC3O15379 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.25■□□□□ 0.51
HDAC3O15379 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.25■□□□□ 0.51
HDAC3O15379 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDAC3O15379 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.24■□□□□ 0.51
HDAC3O15379 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.24■□□□□ 0.51
HDAC3O15379 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HDAC3O15379 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.24■□□□□ 0.51
HDAC3O15379 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms