Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
CUX2O14529 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC32.05■■■□□ 2.72
CUX2O14529 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC32.05■■■□□ 2.72
CUX2O14529 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC32.05■■■□□ 2.72
CUX2O14529 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC32.05■■■□□ 2.72
CUX2O14529 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC32.05■■■□□ 2.72
CUX2O14529 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC32.05■■■□□ 2.72
CUX2O14529 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
CUX2O14529 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC32.05■■■□□ 2.72
CUX2O14529 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC32.05■■■□□ 2.72
CUX2O14529 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC32.04■■■□□ 2.72
CUX2O14529 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
CUX2O14529 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
CUX2O14529 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
CUX2O14529 CCDC74BP1-201ENST00000508880 1123 ntBASIC32.04■■■□□ 2.72
CUX2O14529 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC32.04■■■□□ 2.72
CUX2O14529 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC32.04■■■□□ 2.72
CUX2O14529 COPE-211ENST00000600932 1144 ntTSL 5 BASIC32.04■■■□□ 2.72
CUX2O14529 AF228730.6-201ENST00000641497 218 ntBASIC32.04■■■□□ 2.72
CUX2O14529 AC084121.3-201ENST00000641716 218 ntBASIC32.04■■■□□ 2.72
CUX2O14529 AC105233.6-201ENST00000642093 218 ntBASIC32.04■■■□□ 2.72
CUX2O14529 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC32.04■■■□□ 2.72
CUX2O14529 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC32.04■■■□□ 2.72
CUX2O14529 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC32.04■■■□□ 2.72
CUX2O14529 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC32.04■■■□□ 2.72
CUX2O14529 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC32.04■■■□□ 2.72
CUX2O14529 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
CUX2O14529 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
CUX2O14529 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
CUX2O14529 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
CUX2O14529 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
CUX2O14529 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC32.03■■■□□ 2.72
CUX2O14529 METTL26-204ENST00000397665 558 ntTSL 2 BASIC32.03■■■□□ 2.72
CUX2O14529 CNN2P11-201ENST00000429351 262 ntBASIC32.03■■■□□ 2.72
CUX2O14529 THAP5-204ENST00000438865 868 ntTSL 2 BASIC32.03■■■□□ 2.72
CUX2O14529 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC32.03■■■□□ 2.72
CUX2O14529 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC32.03■■■□□ 2.72
CUX2O14529 KRT8P3-201ENST00000519669 1449 ntBASIC32.03■■■□□ 2.72
CUX2O14529 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC32.03■■■□□ 2.72
CUX2O14529 AC190387.1-201ENST00000551683 408 ntBASIC32.03■■■□□ 2.72
CUX2O14529 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC32.03■■■□□ 2.72
CUX2O14529 MTDHP3-201ENST00000594186 672 ntBASIC32.03■■■□□ 2.72
CUX2O14529 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
CUX2O14529 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
CUX2O14529 GOLGA2P11-201ENST00000562660 1621 ntBASIC32.03■■■□□ 2.72
CUX2O14529 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC32.03■■■□□ 2.72
CUX2O14529 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
CUX2O14529 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
CUX2O14529 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
CUX2O14529 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC32.03■■■□□ 2.72
CUX2O14529 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
CUX2O14529 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC32.03■■■□□ 2.72
CUX2O14529 BEX3-201ENST00000361298 921 ntTSL 2 BASIC32.03■■■□□ 2.72
CUX2O14529 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC32.03■■■□□ 2.72
CUX2O14529 AC092474.2-201ENST00000424288 719 ntBASIC32.03■■■□□ 2.72
CUX2O14529 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC32.03■■■□□ 2.72
CUX2O14529 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
CUX2O14529 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC32.03■■■□□ 2.72
CUX2O14529 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC32.03■■■□□ 2.72
CUX2O14529 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
CUX2O14529 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
CUX2O14529 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
CUX2O14529 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
CUX2O14529 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC32.02■■■□□ 2.72
CUX2O14529 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
CUX2O14529 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CUX2O14529 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
CUX2O14529 GK-202ENST00000378941 458 ntTSL 3 BASIC32.02■■■□□ 2.72
CUX2O14529 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC32.02■■■□□ 2.72
CUX2O14529 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC32.02■■■□□ 2.72
CUX2O14529 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC32.02■■■□□ 2.72
CUX2O14529 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC32.02■■■□□ 2.72
CUX2O14529 AC005829.1-201ENST00000570002 483 ntBASIC32.02■■■□□ 2.72
CUX2O14529 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC32.02■■■□□ 2.72
CUX2O14529 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC32.02■■■□□ 2.72
CUX2O14529 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CUX2O14529 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC32.01■■■□□ 2.72
CUX2O14529 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC32.01■■■□□ 2.72
CUX2O14529 MCCD1P1-208ENST00000445732 328 ntBASIC32.01■■■□□ 2.71
CUX2O14529 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC32.01■■■□□ 2.71
CUX2O14529 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
CUX2O14529 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
CUX2O14529 ME2-216ENST00000639850 2331 ntTSL 5 BASIC32.01■■■□□ 2.71
CUX2O14529 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC32.01■■■□□ 2.71
CUX2O14529 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CUX2O14529 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC32■■■□□ 2.71
CUX2O14529 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CUX2O14529 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CUX2O14529 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC32■■■□□ 2.71
CUX2O14529 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CUX2O14529 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC32■■■□□ 2.71
CUX2O14529 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC32■■■□□ 2.71
CUX2O14529 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC32■■■□□ 2.71
CUX2O14529 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC32■■■□□ 2.71
CUX2O14529 AC063926.2-201ENST00000623766 1308 ntBASIC32■■■□□ 2.71
CUX2O14529 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CUX2O14529 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC32■■■□□ 2.71
CUX2O14529 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CUX2O14529 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC32■■■□□ 2.71
CUX2O14529 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC31.99■■■□□ 2.71
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms