RNA–Protein interactions for RNA: ENST00000640058.1

CCDC7-216, Transcript of coiled-coil domain containing 7, humanhuman

TSL 3

Gene CCDC7, Length 251 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC7-216ENST00000640058 AEBP2Q6ZN18 517 aaPredicted RBP30.03■■■□□ 2.4
CCDC7-216ENST00000640058 CHIC1Q5VXU3 224 aa29■■■□□ 2.23
CCDC7-216ENST00000640058 PHF23Q9BUL5 403 aaPredicted RBP25.51■■□□□ 1.67
CCDC7-216ENST00000640058 SENP3Q9H4L4 574 aaPredicted RBP25.47■■□□□ 1.67
CCDC7-216ENST00000640058 FOXD1Q16676 465 aa23.71■■□□□ 1.39
CCDC7-216ENST00000640058 PLPPR3Q6T4P5 718 aa23.41■■□□□ 1.34
CCDC7-216ENST00000640058 PPP6R1Q9UPN7 881 aa22.61■■□□□ 1.21
CCDC7-216ENST00000640058 ADRA2BP18089 450 aa22.6■■□□□ 1.21
CCDC7-216ENST00000640058 PIAS4Q8N2W9 510 aaPredicted RBP22.32■■□□□ 1.16
CCDC7-216ENST00000640058 MSH5O43196 834 aa21.93■■□□□ 1.1
CCDC7-216ENST00000640058 PPP4R3CPQ6ZMV5 832 aa20.63■□□□□ 0.89
CCDC7-216ENST00000640058 MAPK8IP2Q13387 824 aaPredicted RBP20.6■□□□□ 0.89
CCDC7-216ENST00000640058 SCAF1Q9H7N4 1312 aaKnown RBP20.58■□□□□ 0.89
CCDC7-216ENST00000640058 POTEDQ86YR6 584 aa20.53■□□□□ 0.88
CCDC7-216ENST00000640058 DMRT2Q9Y5R5 561 aa20.28■□□□□ 0.84
CCDC7-216ENST00000640058 CNKSR2Q8WXI2 1034 aa20.08■□□□□ 0.81
CCDC7-216ENST00000640058 NCBP3Q53F19 620 aaKnown RBP19.96■□□□□ 0.79
CCDC7-216ENST00000640058 KCNA4P22459 653 aa19.86■□□□□ 0.77
CCDC7-216ENST00000640058 RNF216Q9NWF9 866 aaPredicted RBP19.74■□□□□ 0.75
CCDC7-216ENST00000640058 HOXD11P31277 338 aaPredicted RBP19.73■□□□□ 0.75
CCDC7-216ENST00000640058 NPM3O75607 178 aaKnown RBP19.71■□□□□ 0.75
CCDC7-216ENST00000640058 DCAF8L1A6NGE4 600 aa19.55■□□□□ 0.72
CCDC7-216ENST00000640058 DNAJC5BQ9UF47 199 aa19.01■□□□□ 0.63
CCDC7-216ENST00000640058 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.88■□□□□ 0.61
CCDC7-216ENST00000640058 SLC4A1APQ9BWU0 796 aaKnown RBP18.84■□□□□ 0.61
CCDC7-216ENST00000640058 RNF39Q9H2S5 420 aa18.78■□□□□ 0.6
CCDC7-216ENST00000640058 SLC4A2P04920 1241 aa18.68■□□□□ 0.58
CCDC7-216ENST00000640058 CACNB1Q02641 598 aaPredicted RBP18.56■□□□□ 0.56
CCDC7-216ENST00000640058 U3KPZ7 1027 aaPredicted RBP18.53■□□□□ 0.56
CCDC7-216ENST00000640058 C1QBPQ07021 282 aaKnown RBP18.5■□□□□ 0.55
CCDC7-216ENST00000640058 FOXD4L1Q9NU39 408 aa18.32■□□□□ 0.52
CCDC7-216ENST00000640058 ZBTB22O15209 634 aa18.27■□□□□ 0.52
CCDC7-216ENST00000640058 MYCNP04198 464 aaPredicted RBP18.2■□□□□ 0.5
CCDC7-216ENST00000640058 SPINK5Q9NQ38 1064 aaPredicted RBP18.13■□□□□ 0.49
CCDC7-216ENST00000640058 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.12■□□□□ 0.49
CCDC7-216ENST00000640058 HNRNPUL2Q1KMD3 747 aaKnown RBP18.12■□□□□ 0.49
CCDC7-216ENST00000640058 CAPN15O75808 1086 aa18.08■□□□□ 0.48
CCDC7-216ENST00000640058 SAMD1Q6SPF0 538 aaPredicted RBP18.06■□□□□ 0.48
CCDC7-216ENST00000640058 EHMT2Q96KQ7 1210 aa18.06■□□□□ 0.48
CCDC7-216ENST00000640058 APLP2Q06481 763 aa18■□□□□ 0.47
CCDC7-216ENST00000640058 TRHP20396 242 aaPredicted RBP17.94■□□□□ 0.46
CCDC7-216ENST00000640058 CSRNP3Q8WYN3 585 aa17.9■□□□□ 0.46
CCDC7-216ENST00000640058 ZNF219Q9P2Y4 722 aaPredicted RBP17.84■□□□□ 0.45
CCDC7-216ENST00000640058 DSG3P32926 999 aa17.79■□□□□ 0.44
CCDC7-216ENST00000640058 ATF5Q9Y2D1 282 aaPredicted RBP17.79■□□□□ 0.44
CCDC7-216ENST00000640058 ABCB7O75027 752 aa17.76■□□□□ 0.43
CCDC7-216ENST00000640058 ATXN8OSP0DMR3 200 aa17.63■□□□□ 0.41
CCDC7-216ENST00000640058 POLA2Q14181 598 aa17.54■□□□□ 0.4
CCDC7-216ENST00000640058 ZBTB12Q9Y330 459 aaPredicted RBP17.15■□□□□ 0.34
CCDC7-216ENST00000640058 FBLN2P98095 1184 aa17.02■□□□□ 0.32
CCDC7-216ENST00000640058 OSCARQ8IYS5 282 aa16.99■□□□□ 0.31
CCDC7-216ENST00000640058 MKRN4PQ13434 485 aaPredicted RBP16.98■□□□□ 0.31
CCDC7-216ENST00000640058 RBM42Q9BTD8 480 aaKnown RBP16.92■□□□□ 0.3
CCDC7-216ENST00000640058 SPDYE2BA6NHP3 402 aa16.69■□□□□ 0.26
CCDC7-216ENST00000640058 SPDYE6P0CI01 402 aa16.69■□□□□ 0.26
CCDC7-216ENST00000640058 SPDYE2Q495Y8 402 aa16.69■□□□□ 0.26
CCDC7-216ENST00000640058 AKT1S1Q96B36 256 aa16.66■□□□□ 0.26
CCDC7-216ENST00000640058 ZNF692Q9BU19 519 aaPredicted RBP16.62■□□□□ 0.25
CCDC7-216ENST00000640058 REM2Q8IYK8 340 aaPredicted RBP16.53■□□□□ 0.24
CCDC7-216ENST00000640058 SSUH2Q9Y2M2 353 aa16.53■□□□□ 0.24
CCDC7-216ENST00000640058 SPDYE4A6NLX3 237 aa16.46■□□□□ 0.23
CCDC7-216ENST00000640058 PABPN1Q86U42 306 aaKnown RBP eCLIP16.41■□□□□ 0.22
CCDC7-216ENST00000640058 PITPNM1O00562 1244 aa16.38■□□□□ 0.21
CCDC7-216ENST00000640058 CHRDL2Q6WN34 429 aa16.38■□□□□ 0.21
CCDC7-216ENST00000640058 CLEC11AQ9Y240 323 aa16.31■□□□□ 0.2
CCDC7-216ENST00000640058 SPDYE1Q8NFV5 336 aaPredicted RBP16.28■□□□□ 0.2
CCDC7-216ENST00000640058 FKBP8Q14318 412 aa16.24■□□□□ 0.19
CCDC7-216ENST00000640058 POTEHQ6S545 545 aa16.2■□□□□ 0.18
CCDC7-216ENST00000640058 PIP4P2Q8N4L2 257 aa16.12■□□□□ 0.17
CCDC7-216ENST00000640058 PRR29P0C7W0 189 aa16.07■□□□□ 0.16
CCDC7-216ENST00000640058 FXR2P51116 673 aaKnown RBP eCLIP16.07■□□□□ 0.16
CCDC7-216ENST00000640058 PROM2Q8N271 834 aa16.06■□□□□ 0.16
CCDC7-216ENST00000640058 STAG3Q9UJ98 1225 aa16.01■□□□□ 0.15
CCDC7-216ENST00000640058 PRKAR2AP13861 404 aaKnown RBP15.97■□□□□ 0.15
CCDC7-216ENST00000640058 CHADLQ6NUI6 762 aa15.96■□□□□ 0.15
CCDC7-216ENST00000640058 CREBZFQ9NS37 354 aa15.79■□□□□ 0.12
CCDC7-216ENST00000640058 HAX1O00165 279 aa15.7■□□□□ 0.1
CCDC7-216ENST00000640058 FARP1Q9Y4F1 1045 aaPredicted RBP15.7■□□□□ 0.1
CCDC7-216ENST00000640058 MIER1Q8N108 512 aa15.65■□□□□ 0.1
CCDC7-216ENST00000640058 FBXO3Q9UK99 471 aa15.65■□□□□ 0.1
CCDC7-216ENST00000640058 PLCD3Q8N3E9 789 aa15.62■□□□□ 0.09
CCDC7-216ENST00000640058 PLEKHG5O94827 1062 aa15.56■□□□□ 0.08
CCDC7-216ENST00000640058 MNX1P50219 401 aaPredicted RBP15.56■□□□□ 0.08
CCDC7-216ENST00000640058 EVX2Q03828 476 aa15.55■□□□□ 0.08
CCDC7-216ENST00000640058 C19orf67A6NJJ6 358 aa15.54■□□□□ 0.08
CCDC7-216ENST00000640058 VASPP50552 380 aaPredicted RBP15.51■□□□□ 0.07
CCDC7-216ENST00000640058 NPM1P06748 294 aaKnown RBP eCLIP15.5■□□□□ 0.07
CCDC7-216ENST00000640058 CD44P16070 742 aaKnown RBP15.49■□□□□ 0.07
CCDC7-216ENST00000640058 SP7Q8TDD2 431 aaPredicted RBP15.43■□□□□ 0.06
CCDC7-216ENST00000640058 ZBTB47Q9UFB7 747 aaPredicted RBP15.37■□□□□ 0.05
CCDC7-216ENST00000640058 ZRANB1Q9UGI0 708 aa15.37■□□□□ 0.05
CCDC7-216ENST00000640058 KLHL34Q8N239 644 aa15.35■□□□□ 0.05
CCDC7-216ENST00000640058 PAK3O75914 559 aaPredicted RBP15.33■□□□□ 0.04
CCDC7-216ENST00000640058 TSPYL2Q9H2G4 693 aaPredicted RBP15.32■□□□□ 0.04
CCDC7-216ENST00000640058 RASEFQ8IZ41 740 aa15.29■□□□□ 0.04
CCDC7-216ENST00000640058 IFNLR1Q8IU57 520 aaPredicted RBP15.27■□□□□ 0.04
CCDC7-216ENST00000640058 NUBP1P53384 320 aa15.25■□□□□ 0.03
CCDC7-216ENST00000640058 ZNF579Q8NAF0 562 aaKnown RBP15.23■□□□□ 0.03
CCDC7-216ENST00000640058 PHF12Q96QT6 1004 aa15.23■□□□□ 0.03
CCDC7-216ENST00000640058 GABBR2O75899 941 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms