RNA–Protein interactions for RNA: ENST00000638889.1

CCDC7-211, Transcript of coiled-coil domain containing 7, humanhuman

TSL 3

Gene CCDC7, Length 423 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC7-211ENST00000638889 AEBP2Q6ZN18 517 aaPredicted RBP25.86■■□□□ 1.73
CCDC7-211ENST00000638889 CHIC1Q5VXU3 224 aa24.76■■□□□ 1.55
CCDC7-211ENST00000638889 SENP3Q9H4L4 574 aaPredicted RBP22.12■■□□□ 1.13
CCDC7-211ENST00000638889 PHF23Q9BUL5 403 aaPredicted RBP21.81■■□□□ 1.08
CCDC7-211ENST00000638889 FOXD1Q16676 465 aa20.53■□□□□ 0.88
CCDC7-211ENST00000638889 PLPPR3Q6T4P5 718 aa19.88■□□□□ 0.77
CCDC7-211ENST00000638889 PPP6R1Q9UPN7 881 aa19.29■□□□□ 0.68
CCDC7-211ENST00000638889 MSH5O43196 834 aa19.23■□□□□ 0.67
CCDC7-211ENST00000638889 ADRA2BP18089 450 aa19.23■□□□□ 0.67
CCDC7-211ENST00000638889 PIAS4Q8N2W9 510 aaPredicted RBP19.23■□□□□ 0.67
CCDC7-211ENST00000638889 POTEDQ86YR6 584 aa18.44■□□□□ 0.54
CCDC7-211ENST00000638889 SCAF1Q9H7N4 1312 aaKnown RBP17.71■□□□□ 0.42
CCDC7-211ENST00000638889 MAPK8IP2Q13387 824 aaPredicted RBP17.6■□□□□ 0.41
CCDC7-211ENST00000638889 DMRT2Q9Y5R5 561 aa17.55■□□□□ 0.4
CCDC7-211ENST00000638889 PPP4R3CPQ6ZMV5 832 aa17.4■□□□□ 0.38
CCDC7-211ENST00000638889 CNKSR2Q8WXI2 1034 aa17.08■□□□□ 0.32
CCDC7-211ENST00000638889 HOXD11P31277 338 aaPredicted RBP16.97■□□□□ 0.31
CCDC7-211ENST00000638889 RNF216Q9NWF9 866 aaPredicted RBP16.9■□□□□ 0.3
CCDC7-211ENST00000638889 NCBP3Q53F19 620 aaKnown RBP16.84■□□□□ 0.29
CCDC7-211ENST00000638889 DCAF8L1A6NGE4 600 aa16.76■□□□□ 0.27
CCDC7-211ENST00000638889 NPM3O75607 178 aaKnown RBP16.53■□□□□ 0.24
CCDC7-211ENST00000638889 DNAJC5BQ9UF47 199 aa16.44■□□□□ 0.22
CCDC7-211ENST00000638889 RNF39Q9H2S5 420 aa16.39■□□□□ 0.21
CCDC7-211ENST00000638889 CACNB1Q02641 598 aaPredicted RBP16.36■□□□□ 0.21
CCDC7-211ENST00000638889 KCNA4P22459 653 aa16.32■□□□□ 0.2
CCDC7-211ENST00000638889 C1QBPQ07021 282 aaKnown RBP16.2■□□□□ 0.18
CCDC7-211ENST00000638889 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.14■□□□□ 0.17
CCDC7-211ENST00000638889 U3KPZ7 1027 aaPredicted RBP15.81■□□□□ 0.12
CCDC7-211ENST00000638889 SLC4A2P04920 1241 aa15.74■□□□□ 0.11
CCDC7-211ENST00000638889 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.5■□□□□ 0.07
CCDC7-211ENST00000638889 CAPN15O75808 1086 aa15.5■□□□□ 0.07
CCDC7-211ENST00000638889 HNRNPUL2Q1KMD3 747 aaKnown RBP15.5■□□□□ 0.07
CCDC7-211ENST00000638889 SPINK5Q9NQ38 1064 aaPredicted RBP15.5■□□□□ 0.07
CCDC7-211ENST00000638889 APLP2Q06481 763 aa15.48■□□□□ 0.07
CCDC7-211ENST00000638889 SLC4A1APQ9BWU0 796 aaKnown RBP15.47■□□□□ 0.07
CCDC7-211ENST00000638889 SAMD1Q6SPF0 538 aaPredicted RBP15.4■□□□□ 0.06
CCDC7-211ENST00000638889 DSG3P32926 999 aa15.39■□□□□ 0.05
CCDC7-211ENST00000638889 MYCNP04198 464 aaPredicted RBP15.32■□□□□ 0.04
CCDC7-211ENST00000638889 ZNF219Q9P2Y4 722 aaPredicted RBP15.32■□□□□ 0.04
CCDC7-211ENST00000638889 TRHP20396 242 aaPredicted RBP15.27■□□□□ 0.04
CCDC7-211ENST00000638889 FOXD4L1Q9NU39 408 aa15.24■□□□□ 0.03
CCDC7-211ENST00000638889 ABCB7O75027 752 aa15.11■□□□□ 0.01
CCDC7-211ENST00000638889 ZBTB22O15209 634 aa14.98□□□□□ -0.01
CCDC7-211ENST00000638889 POLA2Q14181 598 aa14.92□□□□□ -0.02
CCDC7-211ENST00000638889 ATF5Q9Y2D1 282 aaPredicted RBP14.87□□□□□ -0.03
CCDC7-211ENST00000638889 ATXN8OSP0DMR3 200 aa14.8□□□□□ -0.04
CCDC7-211ENST00000638889 RBM42Q9BTD8 480 aaKnown RBP14.74□□□□□ -0.05
CCDC7-211ENST00000638889 ZBTB12Q9Y330 459 aaPredicted RBP14.7□□□□□ -0.06
CCDC7-211ENST00000638889 POTEHQ6S545 545 aa14.5□□□□□ -0.09
CCDC7-211ENST00000638889 CSRNP3Q8WYN3 585 aa14.46□□□□□ -0.09
CCDC7-211ENST00000638889 AKT1S1Q96B36 256 aa14.42□□□□□ -0.1
CCDC7-211ENST00000638889 OSCARQ8IYS5 282 aa14.41□□□□□ -0.1
CCDC7-211ENST00000638889 FBLN2P98095 1184 aa14.38□□□□□ -0.11
CCDC7-211ENST00000638889 EHMT2Q96KQ7 1210 aa14.31□□□□□ -0.12
CCDC7-211ENST00000638889 CHRDL2Q6WN34 429 aa14.3□□□□□ -0.12
CCDC7-211ENST00000638889 SPDYE2BA6NHP3 402 aa14.24□□□□□ -0.13
CCDC7-211ENST00000638889 SPDYE6P0CI01 402 aa14.24□□□□□ -0.13
CCDC7-211ENST00000638889 SPDYE2Q495Y8 402 aa14.24□□□□□ -0.13
CCDC7-211ENST00000638889 REM2Q8IYK8 340 aaPredicted RBP14.24□□□□□ -0.13
CCDC7-211ENST00000638889 MKRN4PQ13434 485 aaPredicted RBP14.22□□□□□ -0.13
CCDC7-211ENST00000638889 PITPNM1O00562 1244 aa14.07□□□□□ -0.16
CCDC7-211ENST00000638889 ZNF692Q9BU19 519 aaPredicted RBP14.06□□□□□ -0.16
CCDC7-211ENST00000638889 SSUH2Q9Y2M2 353 aa14.04□□□□□ -0.16
CCDC7-211ENST00000638889 PIP4P2Q8N4L2 257 aa13.98□□□□□ -0.17
CCDC7-211ENST00000638889 FXR2P51116 673 aaKnown RBP eCLIP13.96□□□□□ -0.17
CCDC7-211ENST00000638889 SPDYE1Q8NFV5 336 aaPredicted RBP13.95□□□□□ -0.18
CCDC7-211ENST00000638889 CLEC11AQ9Y240 323 aa13.86□□□□□ -0.19
CCDC7-211ENST00000638889 PABPN1Q86U42 306 aaKnown RBP eCLIP13.84□□□□□ -0.19
CCDC7-211ENST00000638889 PRKAR2AP13861 404 aaKnown RBP13.71□□□□□ -0.21
CCDC7-211ENST00000638889 HAX1O00165 279 aa13.69□□□□□ -0.22
CCDC7-211ENST00000638889 PRR29P0C7W0 189 aa13.69□□□□□ -0.22
CCDC7-211ENST00000638889 SP7Q8TDD2 431 aaPredicted RBP13.67□□□□□ -0.22
CCDC7-211ENST00000638889 SPDYE4A6NLX3 237 aa13.66□□□□□ -0.22
CCDC7-211ENST00000638889 STAG3Q9UJ98 1225 aa13.57□□□□□ -0.24
CCDC7-211ENST00000638889 CHADLQ6NUI6 762 aa13.54□□□□□ -0.24
CCDC7-211ENST00000638889 C19orf67A6NJJ6 358 aa13.49□□□□□ -0.25
CCDC7-211ENST00000638889 EVX2Q03828 476 aa13.48□□□□□ -0.25
CCDC7-211ENST00000638889 FARP1Q9Y4F1 1045 aaPredicted RBP13.43□□□□□ -0.26
CCDC7-211ENST00000638889 PROM2Q8N271 834 aa13.38□□□□□ -0.27
CCDC7-211ENST00000638889 CREBZFQ9NS37 354 aa13.36□□□□□ -0.27
CCDC7-211ENST00000638889 CD44P16070 742 aaKnown RBP13.29□□□□□ -0.28
CCDC7-211ENST00000638889 GABBR2O75899 941 aa13.24□□□□□ -0.29
CCDC7-211ENST00000638889 CLCN6P51797 869 aa13.21□□□□□ -0.29
CCDC7-211ENST00000638889 NPM1P06748 294 aaKnown RBP eCLIP13.18□□□□□ -0.3
CCDC7-211ENST00000638889 MNX1P50219 401 aaPredicted RBP13.15□□□□□ -0.3
CCDC7-211ENST00000638889 ZNF579Q8NAF0 562 aaKnown RBP13.13□□□□□ -0.31
CCDC7-211ENST00000638889 ZRANB1Q9UGI0 708 aa13.13□□□□□ -0.31
CCDC7-211ENST00000638889 PAK3O75914 559 aaPredicted RBP13.1□□□□□ -0.31
CCDC7-211ENST00000638889 FKBP8Q14318 412 aa13.1□□□□□ -0.31
CCDC7-211ENST00000638889 PLEKHG5O94827 1062 aa13.05□□□□□ -0.32
CCDC7-211ENST00000638889 MIER1Q8N108 512 aa13.01□□□□□ -0.33
CCDC7-211ENST00000638889 POTEIP0CG38 1075 aa12.93□□□□□ -0.34
CCDC7-211ENST00000638889 PLCD3Q8N3E9 789 aa12.93□□□□□ -0.34
CCDC7-211ENST00000638889 DCBLD2Q96PD2 775 aa12.93□□□□□ -0.34
CCDC7-211ENST00000638889 PHF12Q96QT6 1004 aa12.92□□□□□ -0.34
CCDC7-211ENST00000638889 GALR2O43603 387 aaPredicted RBP12.9□□□□□ -0.34
CCDC7-211ENST00000638889 ZBTB47Q9UFB7 747 aaPredicted RBP12.89□□□□□ -0.35
CCDC7-211ENST00000638889 TSPYL2Q9H2G4 693 aaPredicted RBP12.87□□□□□ -0.35
CCDC7-211ENST00000638889 FBXO3Q9UK99 471 aa12.87□□□□□ -0.35
CCDC7-211ENST00000638889 CCDC61Q9Y6R9 512 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 2004.8 ms