RNA–Protein interactions for RNA: ENST00000637354.1

PTPRD-215, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 5

Gene PTPRD, Length 891 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-215ENST00000637354 AEBP2Q6ZN18 517 aaPredicted RBP25.55■■□□□ 1.68
PTPRD-215ENST00000637354 CHIC1Q5VXU3 224 aa24.27■■□□□ 1.48
PTPRD-215ENST00000637354 SENP3Q9H4L4 574 aaPredicted RBP21.97■■□□□ 1.11
PTPRD-215ENST00000637354 PHF23Q9BUL5 403 aaPredicted RBP21.57■■□□□ 1.04
PTPRD-215ENST00000637354 FOXD1Q16676 465 aa20.37■□□□□ 0.85
PTPRD-215ENST00000637354 PLPPR3Q6T4P5 718 aa19.4■□□□□ 0.7
PTPRD-215ENST00000637354 MSH5O43196 834 aa19.24■□□□□ 0.67
PTPRD-215ENST00000637354 PIAS4Q8N2W9 510 aaPredicted RBP19.05■□□□□ 0.64
PTPRD-215ENST00000637354 PPP6R1Q9UPN7 881 aa18.9■□□□□ 0.62
PTPRD-215ENST00000637354 ADRA2BP18089 450 aa18.84■□□□□ 0.61
PTPRD-215ENST00000637354 POTEDQ86YR6 584 aa18.81■□□□□ 0.6
PTPRD-215ENST00000637354 SCAF1Q9H7N4 1312 aaKnown RBP17.44■□□□□ 0.38
PTPRD-215ENST00000637354 DMRT2Q9Y5R5 561 aa17.38■□□□□ 0.37
PTPRD-215ENST00000637354 MAPK8IP2Q13387 824 aaPredicted RBP17.29■□□□□ 0.36
PTPRD-215ENST00000637354 PPP4R3CPQ6ZMV5 832 aa16.92■□□□□ 0.3
PTPRD-215ENST00000637354 HOXD11P31277 338 aaPredicted RBP16.72■□□□□ 0.27
PTPRD-215ENST00000637354 CNKSR2Q8WXI2 1034 aa16.69■□□□□ 0.26
PTPRD-215ENST00000637354 RNF216Q9NWF9 866 aaPredicted RBP16.58■□□□□ 0.24
PTPRD-215ENST00000637354 DCAF8L1A6NGE4 600 aa16.57■□□□□ 0.24
PTPRD-215ENST00000637354 CACNB1Q02641 598 aaPredicted RBP16.47■□□□□ 0.23
PTPRD-215ENST00000637354 NCBP3Q53F19 620 aaKnown RBP16.34■□□□□ 0.21
PTPRD-215ENST00000637354 RNF39Q9H2S5 420 aa16.34■□□□□ 0.21
PTPRD-215ENST00000637354 DNAJC5BQ9UF47 199 aa16.29■□□□□ 0.2
PTPRD-215ENST00000637354 C1QBPQ07021 282 aaKnown RBP16.16■□□□□ 0.18
PTPRD-215ENST00000637354 NPM3O75607 178 aaKnown RBP16■□□□□ 0.15
PTPRD-215ENST00000637354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.88■□□□□ 0.13
PTPRD-215ENST00000637354 KCNA4P22459 653 aa15.56■□□□□ 0.08
PTPRD-215ENST00000637354 U3KPZ7 1027 aaPredicted RBP15.52■□□□□ 0.08
PTPRD-215ENST00000637354 CAPN15O75808 1086 aa15.29■□□□□ 0.04
PTPRD-215ENST00000637354 SLC4A2P04920 1241 aa15.28■□□□□ 0.04
PTPRD-215ENST00000637354 APLP2Q06481 763 aa15.27■□□□□ 0.04
PTPRD-215ENST00000637354 SPINK5Q9NQ38 1064 aaPredicted RBP15.26■□□□□ 0.03
PTPRD-215ENST00000637354 DSG3P32926 999 aa15.24■□□□□ 0.03
PTPRD-215ENST00000637354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.2■□□□□ 0.02
PTPRD-215ENST00000637354 HNRNPUL2Q1KMD3 747 aaKnown RBP15.2■□□□□ 0.02
PTPRD-215ENST00000637354 ZNF219Q9P2Y4 722 aaPredicted RBP15.11■□□□□ 0.01
PTPRD-215ENST00000637354 SAMD1Q6SPF0 538 aaPredicted RBP15.07■□□□□ 0
PTPRD-215ENST00000637354 TRHP20396 242 aaPredicted RBP15□□□□□ -0.01
PTPRD-215ENST00000637354 MYCNP04198 464 aaPredicted RBP14.89□□□□□ -0.03
PTPRD-215ENST00000637354 ABCB7O75027 752 aa14.88□□□□□ -0.03
PTPRD-215ENST00000637354 POTEHQ6S545 545 aa14.75□□□□□ -0.05
PTPRD-215ENST00000637354 SLC4A1APQ9BWU0 796 aaKnown RBP14.73□□□□□ -0.05
PTPRD-215ENST00000637354 RBM42Q9BTD8 480 aaKnown RBP14.68□□□□□ -0.06
PTPRD-215ENST00000637354 FOXD4L1Q9NU39 408 aa14.66□□□□□ -0.06
PTPRD-215ENST00000637354 POLA2Q14181 598 aa14.59□□□□□ -0.07
PTPRD-215ENST00000637354 ZBTB12Q9Y330 459 aaPredicted RBP14.46□□□□□ -0.09
PTPRD-215ENST00000637354 EHMT2Q96KQ7 1210 aa14.41□□□□□ -0.1
PTPRD-215ENST00000637354 ATF5Q9Y2D1 282 aaPredicted RBP14.38□□□□□ -0.11
PTPRD-215ENST00000637354 ATXN8OSP0DMR3 200 aa14.29□□□□□ -0.12
PTPRD-215ENST00000637354 CHRDL2Q6WN34 429 aa14.29□□□□□ -0.12
PTPRD-215ENST00000637354 ZBTB22O15209 634 aa14.27□□□□□ -0.13
PTPRD-215ENST00000637354 AKT1S1Q96B36 256 aa14.27□□□□□ -0.13
PTPRD-215ENST00000637354 OSCARQ8IYS5 282 aa14.13□□□□□ -0.15
PTPRD-215ENST00000637354 REM2Q8IYK8 340 aaPredicted RBP14.06□□□□□ -0.16
PTPRD-215ENST00000637354 FBLN2P98095 1184 aa14□□□□□ -0.17
PTPRD-215ENST00000637354 SPDYE2BA6NHP3 402 aa13.95□□□□□ -0.18
PTPRD-215ENST00000637354 SPDYE6P0CI01 402 aa13.95□□□□□ -0.18
PTPRD-215ENST00000637354 SPDYE2Q495Y8 402 aa13.95□□□□□ -0.18
PTPRD-215ENST00000637354 CSRNP3Q8WYN3 585 aa13.92□□□□□ -0.18
PTPRD-215ENST00000637354 PITPNM1O00562 1244 aa13.9□□□□□ -0.18
PTPRD-215ENST00000637354 PIP4P2Q8N4L2 257 aa13.9□□□□□ -0.18
PTPRD-215ENST00000637354 FXR2P51116 673 aaKnown RBP eCLIP13.84□□□□□ -0.19
PTPRD-215ENST00000637354 SP7Q8TDD2 431 aaPredicted RBP13.8□□□□□ -0.2
PTPRD-215ENST00000637354 MKRN4PQ13434 485 aaPredicted RBP13.76□□□□□ -0.21
PTPRD-215ENST00000637354 SPDYE1Q8NFV5 336 aaPredicted RBP13.72□□□□□ -0.21
PTPRD-215ENST00000637354 SSUH2Q9Y2M2 353 aa13.72□□□□□ -0.21
PTPRD-215ENST00000637354 ZNF692Q9BU19 519 aaPredicted RBP13.69□□□□□ -0.22
PTPRD-215ENST00000637354 HAX1O00165 279 aa13.66□□□□□ -0.22
PTPRD-215ENST00000637354 CLEC11AQ9Y240 323 aa13.59□□□□□ -0.23
PTPRD-215ENST00000637354 PRKAR2AP13861 404 aaKnown RBP13.55□□□□□ -0.24
PTPRD-215ENST00000637354 PABPN1Q86U42 306 aaKnown RBP eCLIP13.47□□□□□ -0.25
PTPRD-215ENST00000637354 PRR29P0C7W0 189 aa13.41□□□□□ -0.26
PTPRD-215ENST00000637354 C19orf67A6NJJ6 358 aa13.39□□□□□ -0.27
PTPRD-215ENST00000637354 EVX2Q03828 476 aa13.39□□□□□ -0.27
PTPRD-215ENST00000637354 CHADLQ6NUI6 762 aa13.3□□□□□ -0.28
PTPRD-215ENST00000637354 STAG3Q9UJ98 1225 aa13.2□□□□□ -0.3
PTPRD-215ENST00000637354 GABBR2O75899 941 aa13.18□□□□□ -0.3
PTPRD-215ENST00000637354 FARP1Q9Y4F1 1045 aaPredicted RBP13.18□□□□□ -0.3
PTPRD-215ENST00000637354 CLCN6P51797 869 aa13.15□□□□□ -0.3
PTPRD-215ENST00000637354 SPDYE4A6NLX3 237 aa13.12□□□□□ -0.31
PTPRD-215ENST00000637354 CD44P16070 742 aaKnown RBP13.12□□□□□ -0.31
PTPRD-215ENST00000637354 CREBZFQ9NS37 354 aa13.02□□□□□ -0.33
PTPRD-215ENST00000637354 ZNF579Q8NAF0 562 aaKnown RBP12.97□□□□□ -0.33
PTPRD-215ENST00000637354 LHX8Q68G74 356 aa12.92□□□□□ -0.34
PTPRD-215ENST00000637354 ZRANB1Q9UGI0 708 aa12.91□□□□□ -0.34
PTPRD-215ENST00000637354 PAK3O75914 559 aaPredicted RBP12.88□□□□□ -0.35
PTPRD-215ENST00000637354 NPM1P06748 294 aaKnown RBP eCLIP12.88□□□□□ -0.35
PTPRD-215ENST00000637354 POTEIP0CG38 1075 aa12.85□□□□□ -0.35
PTPRD-215ENST00000637354 DCBLD2Q96PD2 775 aa12.85□□□□□ -0.35
PTPRD-215ENST00000637354 PROM2Q8N271 834 aa12.84□□□□□ -0.35
PTPRD-215ENST00000637354 MNX1P50219 401 aaPredicted RBP12.79□□□□□ -0.36
PTPRD-215ENST00000637354 GALR2O43603 387 aaPredicted RBP12.72□□□□□ -0.37
PTPRD-215ENST00000637354 PHF12Q96QT6 1004 aa12.67□□□□□ -0.38
PTPRD-215ENST00000637354 PLEKHG5O94827 1062 aa12.63□□□□□ -0.39
PTPRD-215ENST00000637354 FKBP8Q14318 412 aa12.61□□□□□ -0.39
PTPRD-215ENST00000637354 MS4A3Q96HJ5 214 aa12.54□□□□□ -0.4
PTPRD-215ENST00000637354 ASTLQ6HA08 431 aaPredicted RBP12.53□□□□□ -0.4
PTPRD-215ENST00000637354 CCDC61Q9Y6R9 512 aa12.53□□□□□ -0.4
PTPRD-215ENST00000637354 TSPYL2Q9H2G4 693 aaPredicted RBP12.51□□□□□ -0.41
PTPRD-215ENST00000637354 MIER1Q8N108 512 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms