RNA–Protein interactions for RNA: ENST00000636602.1

CLN5-212, Transcript of CLN5, intracellular trafficking protein, humanhuman

TSL 3

Gene CLN5, Length 661 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN5-212ENST00000636602 AEBP2Q6ZN18 517 aaPredicted RBP28.66■■■□□ 2.18
CLN5-212ENST00000636602 CHIC1Q5VXU3 224 aa26.77■■□□□ 1.88
CLN5-212ENST00000636602 SENP3Q9H4L4 574 aaPredicted RBP24.51■■□□□ 1.51
CLN5-212ENST00000636602 PHF23Q9BUL5 403 aaPredicted RBP24.13■■□□□ 1.45
CLN5-212ENST00000636602 FOXD1Q16676 465 aa22.91■■□□□ 1.26
CLN5-212ENST00000636602 POTEDQ86YR6 584 aa21.94■■□□□ 1.1
CLN5-212ENST00000636602 MSH5O43196 834 aa21.63■■□□□ 1.05
CLN5-212ENST00000636602 PIAS4Q8N2W9 510 aaPredicted RBP21.29■■□□□ 1
CLN5-212ENST00000636602 PLPPR3Q6T4P5 718 aa21.14■□□□□ 0.97
CLN5-212ENST00000636602 PPP6R1Q9UPN7 881 aa21.06■□□□□ 0.96
CLN5-212ENST00000636602 ADRA2BP18089 450 aa20.96■□□□□ 0.95
CLN5-212ENST00000636602 MAPK8IP2Q13387 824 aaPredicted RBP19.4■□□□□ 0.7
CLN5-212ENST00000636602 DMRT2Q9Y5R5 561 aa19.37■□□□□ 0.69
CLN5-212ENST00000636602 SCAF1Q9H7N4 1312 aaKnown RBP19.18■□□□□ 0.66
CLN5-212ENST00000636602 CACNB1Q02641 598 aaPredicted RBP18.85■□□□□ 0.61
CLN5-212ENST00000636602 DCAF8L1A6NGE4 600 aa18.59■□□□□ 0.57
CLN5-212ENST00000636602 HOXD11P31277 338 aaPredicted RBP18.47■□□□□ 0.55
CLN5-212ENST00000636602 PPP4R3CPQ6ZMV5 832 aa18.47■□□□□ 0.55
CLN5-212ENST00000636602 RNF39Q9H2S5 420 aa18.41■□□□□ 0.54
CLN5-212ENST00000636602 CNKSR2Q8WXI2 1034 aa18.24■□□□□ 0.51
CLN5-212ENST00000636602 RNF216Q9NWF9 866 aaPredicted RBP18.2■□□□□ 0.5
CLN5-212ENST00000636602 C1QBPQ07021 282 aaKnown RBP18.12■□□□□ 0.49
CLN5-212ENST00000636602 DNAJC5BQ9UF47 199 aa17.94■□□□□ 0.46
CLN5-212ENST00000636602 NCBP3Q53F19 620 aaKnown RBP17.62■□□□□ 0.41
CLN5-212ENST00000636602 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.59■□□□□ 0.41
CLN5-212ENST00000636602 NPM3O75607 178 aaKnown RBP17.36■□□□□ 0.37
CLN5-212ENST00000636602 U3KPZ7 1027 aaPredicted RBP17.17■□□□□ 0.34
CLN5-212ENST00000636602 POTEHQ6S545 545 aa17.09■□□□□ 0.33
CLN5-212ENST00000636602 DSG3P32926 999 aa17.08■□□□□ 0.32
CLN5-212ENST00000636602 SPINK5Q9NQ38 1064 aaPredicted RBP17.07■□□□□ 0.32
CLN5-212ENST00000636602 CAPN15O75808 1086 aa17.06■□□□□ 0.32
CLN5-212ENST00000636602 SLC4A2P04920 1241 aa16.71■□□□□ 0.27
CLN5-212ENST00000636602 TRHP20396 242 aaPredicted RBP16.67■□□□□ 0.26
CLN5-212ENST00000636602 APLP2Q06481 763 aa16.63■□□□□ 0.25
CLN5-212ENST00000636602 ABCB7O75027 752 aa16.62■□□□□ 0.25
CLN5-212ENST00000636602 ZNF219Q9P2Y4 722 aaPredicted RBP16.62■□□□□ 0.25
CLN5-212ENST00000636602 KCNA4P22459 653 aa16.59■□□□□ 0.25
CLN5-212ENST00000636602 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.5■□□□□ 0.23
CLN5-212ENST00000636602 HNRNPUL2Q1KMD3 747 aaKnown RBP16.5■□□□□ 0.23
CLN5-212ENST00000636602 SAMD1Q6SPF0 538 aaPredicted RBP16.39■□□□□ 0.21
CLN5-212ENST00000636602 RBM42Q9BTD8 480 aaKnown RBP16.3■□□□□ 0.2
CLN5-212ENST00000636602 CHRDL2Q6WN34 429 aa16.14■□□□□ 0.17
CLN5-212ENST00000636602 POLA2Q14181 598 aa16.12■□□□□ 0.17
CLN5-212ENST00000636602 MYCNP04198 464 aaPredicted RBP16.07■□□□□ 0.16
CLN5-212ENST00000636602 AKT1S1Q96B36 256 aa15.83■□□□□ 0.12
CLN5-212ENST00000636602 SP7Q8TDD2 431 aaPredicted RBP15.8■□□□□ 0.12
CLN5-212ENST00000636602 ATF5Q9Y2D1 282 aaPredicted RBP15.75■□□□□ 0.11
CLN5-212ENST00000636602 ZBTB12Q9Y330 459 aaPredicted RBP15.74■□□□□ 0.11
CLN5-212ENST00000636602 REM2Q8IYK8 340 aaPredicted RBP15.68■□□□□ 0.1
CLN5-212ENST00000636602 PIP4P2Q8N4L2 257 aa15.66■□□□□ 0.1
CLN5-212ENST00000636602 FOXD4L1Q9NU39 408 aa15.64■□□□□ 0.09
CLN5-212ENST00000636602 OSCARQ8IYS5 282 aa15.61■□□□□ 0.09
CLN5-212ENST00000636602 SLC4A1APQ9BWU0 796 aaKnown RBP15.57■□□□□ 0.08
CLN5-212ENST00000636602 PITPNM1O00562 1244 aa15.52■□□□□ 0.08
CLN5-212ENST00000636602 HAX1O00165 279 aa15.5■□□□□ 0.07
CLN5-212ENST00000636602 FXR2P51116 673 aaKnown RBP eCLIP15.49■□□□□ 0.07
CLN5-212ENST00000636602 EVX2Q03828 476 aa15.28■□□□□ 0.04
CLN5-212ENST00000636602 ZBTB22O15209 634 aa15.25■□□□□ 0.03
CLN5-212ENST00000636602 SPDYE2BA6NHP3 402 aa15.22■□□□□ 0.03
CLN5-212ENST00000636602 SPDYE6P0CI01 402 aa15.22■□□□□ 0.03
CLN5-212ENST00000636602 SPDYE2Q495Y8 402 aa15.22■□□□□ 0.03
CLN5-212ENST00000636602 ATXN8OSP0DMR3 200 aa15.21■□□□□ 0.03
CLN5-212ENST00000636602 FBLN2P98095 1184 aa15.15■□□□□ 0.02
CLN5-212ENST00000636602 PRKAR2AP13861 404 aaKnown RBP15.11■□□□□ 0.01
CLN5-212ENST00000636602 SPDYE1Q8NFV5 336 aaPredicted RBP15.07■□□□□ 0
CLN5-212ENST00000636602 CLEC11AQ9Y240 323 aa15.07■□□□□ 0
CLN5-212ENST00000636602 C19orf67A6NJJ6 358 aa15.02■□□□□ -0
CLN5-212ENST00000636602 MKRN4PQ13434 485 aaPredicted RBP14.99□□□□□ -0.01
CLN5-212ENST00000636602 ZNF692Q9BU19 519 aaPredicted RBP14.97□□□□□ -0.01
CLN5-212ENST00000636602 SSUH2Q9Y2M2 353 aa14.96□□□□□ -0.01
CLN5-212ENST00000636602 GABBR2O75899 941 aa14.91□□□□□ -0.02
CLN5-212ENST00000636602 CHADLQ6NUI6 762 aa14.84□□□□□ -0.03
CLN5-212ENST00000636602 LHX8Q68G74 356 aa14.81□□□□□ -0.04
CLN5-212ENST00000636602 PRR29P0C7W0 189 aa14.76□□□□□ -0.05
CLN5-212ENST00000636602 PABPN1Q86U42 306 aaKnown RBP eCLIP14.72□□□□□ -0.05
CLN5-212ENST00000636602 CD44P16070 742 aaKnown RBP14.6□□□□□ -0.07
CLN5-212ENST00000636602 POTEIP0CG38 1075 aa14.59□□□□□ -0.07
CLN5-212ENST00000636602 FARP1Q9Y4F1 1045 aaPredicted RBP14.57□□□□□ -0.08
CLN5-212ENST00000636602 CLCN6P51797 869 aa14.51□□□□□ -0.09
CLN5-212ENST00000636602 DCBLD2Q96PD2 775 aa14.4□□□□□ -0.1
CLN5-212ENST00000636602 ZNF579Q8NAF0 562 aaKnown RBP14.36□□□□□ -0.11
CLN5-212ENST00000636602 ZRANB1Q9UGI0 708 aa14.32□□□□□ -0.12
CLN5-212ENST00000636602 CREBZFQ9NS37 354 aa14.29□□□□□ -0.12
CLN5-212ENST00000636602 PLSCR2Q9NRY7 297 aa14.25□□□□□ -0.13
CLN5-212ENST00000636602 STAG3Q9UJ98 1225 aa14.22□□□□□ -0.13
CLN5-212ENST00000636602 GALR2O43603 387 aaPredicted RBP14.21□□□□□ -0.13
CLN5-212ENST00000636602 OTUD5Q96G74 571 aa14.15□□□□□ -0.14
CLN5-212ENST00000636602 CSRNP3Q8WYN3 585 aa14.11□□□□□ -0.15
CLN5-212ENST00000636602 POTEB2H3BUK9 544 aa14.1□□□□□ -0.15
CLN5-212ENST00000636602 PAK3O75914 559 aaPredicted RBP14.09□□□□□ -0.15
CLN5-212ENST00000636602 PHF12Q96QT6 1004 aa14.08□□□□□ -0.16
CLN5-212ENST00000636602 SPDYE4A6NLX3 237 aa14.03□□□□□ -0.16
CLN5-212ENST00000636602 NPM1P06748 294 aaKnown RBP eCLIP14.01□□□□□ -0.17
CLN5-212ENST00000636602 PELP1Q8IZL8 1130 aaKnown RBP14□□□□□ -0.17
CLN5-212ENST00000636602 MNX1P50219 401 aaPredicted RBP13.98□□□□□ -0.17
CLN5-212ENST00000636602 POTEMA6NI47 508 aa13.96□□□□□ -0.17
CLN5-212ENST00000636602 POTEGQ6S5H5 508 aa13.91□□□□□ -0.18
CLN5-212ENST00000636602 ASTLQ6HA08 431 aaPredicted RBP13.9□□□□□ -0.18
CLN5-212ENST00000636602 METRNQ9UJH8 293 aa13.88□□□□□ -0.19
CLN5-212ENST00000636602 MS4A3Q96HJ5 214 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms