RNA–Protein interactions for RNA: ENST00000635030.1

SMARCA2-233, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, human

TSL 4

Gene SMARCA2, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCA2-233	ENST00000635030	AEBP2	Q6ZN18	517 aa	Predicted RBP	20.17	■□□□□ 0.82
SMARCA2-233	ENST00000635030	CHIC1	Q5VXU3	224 aa		19.37	■□□□□ 0.69
SMARCA2-233	ENST00000635030	SENP3	Q9H4L4	574 aa	Predicted RBP	17.22	■□□□□ 0.35
SMARCA2-233	ENST00000635030	PHF23	Q9BUL5	403 aa	Predicted RBP	17.03	■□□□□ 0.32
SMARCA2-233	ENST00000635030	FOXD1	Q16676	465 aa		16	■□□□□ 0.15
SMARCA2-233	ENST00000635030	PLPPR3	Q6T4P5	718 aa		15.62	■□□□□ 0.09
SMARCA2-233	ENST00000635030	ADRA2B	P18089	450 aa		15.13	■□□□□ 0.01
SMARCA2-233	ENST00000635030	PPP6R1	Q9UPN7	881 aa		15.13	■□□□□ 0.01
SMARCA2-233	ENST00000635030	PIAS4	Q8N2W9	510 aa	Predicted RBP	15.08	■□□□□ 0
SMARCA2-233	ENST00000635030	MSH5	O43196	834 aa		14.93	□□□□□ -0.02
SMARCA2-233	ENST00000635030	POTED	Q86YR6	584 aa		14.19	□□□□□ -0.14
SMARCA2-233	ENST00000635030	SCAF1	Q9H7N4	1312 aa	Known RBP	13.88	□□□□□ -0.19
SMARCA2-233	ENST00000635030	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.83	□□□□□ -0.2
SMARCA2-233	ENST00000635030	PPP4R3CP	Q6ZMV5	832 aa		13.72	□□□□□ -0.21
SMARCA2-233	ENST00000635030	DMRT2	Q9Y5R5	561 aa		13.66	□□□□□ -0.22
SMARCA2-233	ENST00000635030	CNKSR2	Q8WXI2	1034 aa		13.4	□□□□□ -0.26
SMARCA2-233	ENST00000635030	NCBP3	Q53F19	620 aa	Known RBP	13.29	□□□□□ -0.28
SMARCA2-233	ENST00000635030	DCAF8L1	A6NGE4	600 aa		13.26	□□□□□ -0.29
SMARCA2-233	ENST00000635030	HOXD11	P31277	338 aa	Predicted RBP	13.21	□□□□□ -0.29
SMARCA2-233	ENST00000635030	RNF216	Q9NWF9	866 aa	Predicted RBP	13.21	□□□□□ -0.29
SMARCA2-233	ENST00000635030	NPM3	O75607	178 aa	Known RBP	13.05	□□□□□ -0.32
SMARCA2-233	ENST00000635030	KCNA4	P22459	653 aa		13	□□□□□ -0.33
SMARCA2-233	ENST00000635030	CACNB1	Q02641	598 aa	Predicted RBP	12.74	□□□□□ -0.37
SMARCA2-233	ENST00000635030	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.72	□□□□□ -0.37
SMARCA2-233	ENST00000635030	RNF39	Q9H2S5	420 aa		12.72	□□□□□ -0.37
SMARCA2-233	ENST00000635030	DNAJC5B	Q9UF47	199 aa		12.66	□□□□□ -0.38
SMARCA2-233	ENST00000635030	C1QBP	Q07021	282 aa	Known RBP	12.57	□□□□□ -0.4
SMARCA2-233	ENST00000635030		U3KPZ7	1027 aa	Predicted RBP	12.38	□□□□□ -0.43
SMARCA2-233	ENST00000635030	SLC4A2	P04920	1241 aa		12.37	□□□□□ -0.43
SMARCA2-233	ENST00000635030	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.35	□□□□□ -0.43
SMARCA2-233	ENST00000635030	CAPN15	O75808	1086 aa		12.22	□□□□□ -0.45
SMARCA2-233	ENST00000635030	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.18	□□□□□ -0.46
SMARCA2-233	ENST00000635030	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.16	□□□□□ -0.46
SMARCA2-233	ENST00000635030	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.16	□□□□□ -0.46
SMARCA2-233	ENST00000635030	APLP2	Q06481	763 aa		12.13	□□□□□ -0.47
SMARCA2-233	ENST00000635030	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.09	□□□□□ -0.47
SMARCA2-233	ENST00000635030	MYCN	P04198	464 aa	Predicted RBP	12.08	□□□□□ -0.48
SMARCA2-233	ENST00000635030	TRH	P20396	242 aa	Predicted RBP	12.07	□□□□□ -0.48
SMARCA2-233	ENST00000635030	FOXD4L1	Q9NU39	408 aa		12.06	□□□□□ -0.48
SMARCA2-233	ENST00000635030	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12	□□□□□ -0.49
SMARCA2-233	ENST00000635030	DSG3	P32926	999 aa		11.99	□□□□□ -0.49
SMARCA2-233	ENST00000635030	ABCB7	O75027	752 aa		11.94	□□□□□ -0.5
SMARCA2-233	ENST00000635030	ZBTB22	O15209	634 aa		11.92	□□□□□ -0.5
SMARCA2-233	ENST00000635030	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.77	□□□□□ -0.53
SMARCA2-233	ENST00000635030	POLA2	Q14181	598 aa		11.76	□□□□□ -0.53
SMARCA2-233	ENST00000635030	EHMT2	Q96KQ7	1210 aa		11.67	□□□□□ -0.54
SMARCA2-233	ENST00000635030	ATXN8OS	P0DMR3	200 aa		11.64	□□□□□ -0.55
SMARCA2-233	ENST00000635030	CSRNP3	Q8WYN3	585 aa		11.58	□□□□□ -0.56
SMARCA2-233	ENST00000635030	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.52	□□□□□ -0.57
SMARCA2-233	ENST00000635030	RBM42	Q9BTD8	480 aa	Known RBP	11.48	□□□□□ -0.57
SMARCA2-233	ENST00000635030	FBLN2	P98095	1184 aa		11.37	□□□□□ -0.59
SMARCA2-233	ENST00000635030	OSCAR	Q8IYS5	282 aa		11.37	□□□□□ -0.59
SMARCA2-233	ENST00000635030	AKT1S1	Q96B36	256 aa		11.24	□□□□□ -0.61
SMARCA2-233	ENST00000635030	MKRN4P	Q13434	485 aa	Predicted RBP	11.21	□□□□□ -0.61
SMARCA2-233	ENST00000635030	POTEH	Q6S545	545 aa		11.2	□□□□□ -0.62
SMARCA2-233	ENST00000635030	SPDYE2B	A6NHP3	402 aa		11.16	□□□□□ -0.62
SMARCA2-233	ENST00000635030	SPDYE6	P0CI01	402 aa		11.16	□□□□□ -0.62
SMARCA2-233	ENST00000635030	SPDYE2	Q495Y8	402 aa		11.16	□□□□□ -0.62
SMARCA2-233	ENST00000635030	CHRDL2	Q6WN34	429 aa		11.14	□□□□□ -0.63
SMARCA2-233	ENST00000635030	REM2	Q8IYK8	340 aa	Predicted RBP	11.14	□□□□□ -0.63
SMARCA2-233	ENST00000635030	ZNF692	Q9BU19	519 aa	Predicted RBP	11.12	□□□□□ -0.63
SMARCA2-233	ENST00000635030	PITPNM1	O00562	1244 aa		11.02	□□□□□ -0.65
SMARCA2-233	ENST00000635030	CLEC11A	Q9Y240	323 aa		10.99	□□□□□ -0.65
SMARCA2-233	ENST00000635030	SSUH2	Q9Y2M2	353 aa		10.99	□□□□□ -0.65
SMARCA2-233	ENST00000635030	PABPN1	Q86U42	306 aa	Known RBP eCLIP	10.95	□□□□□ -0.66
SMARCA2-233	ENST00000635030	SPDYE1	Q8NFV5	336 aa	Predicted RBP	10.94	□□□□□ -0.66
SMARCA2-233	ENST00000635030	PIP4P2	Q8N4L2	257 aa		10.91	□□□□□ -0.66
SMARCA2-233	ENST00000635030	SPDYE4	A6NLX3	237 aa		10.86	□□□□□ -0.67
SMARCA2-233	ENST00000635030	FXR2	P51116	673 aa	Known RBP eCLIP	10.84	□□□□□ -0.67
SMARCA2-233	ENST00000635030	PRR29	P0C7W0	189 aa		10.8	□□□□□ -0.68
SMARCA2-233	ENST00000635030	PRKAR2A	P13861	404 aa	Known RBP	10.78	□□□□□ -0.68
SMARCA2-233	ENST00000635030	HAX1	O00165	279 aa		10.73	□□□□□ -0.69
SMARCA2-233	ENST00000635030	CHADL	Q6NUI6	762 aa		10.71	□□□□□ -0.69
SMARCA2-233	ENST00000635030	STAG3	Q9UJ98	1225 aa		10.68	□□□□□ -0.7
SMARCA2-233	ENST00000635030	SP7	Q8TDD2	431 aa	Predicted RBP	10.59	□□□□□ -0.71
SMARCA2-233	ENST00000635030	FKBP8	Q14318	412 aa		10.56	□□□□□ -0.72
SMARCA2-233	ENST00000635030	FARP1	Q9Y4F1	1045 aa	Predicted RBP	10.54	□□□□□ -0.72
SMARCA2-233	ENST00000635030	EVX2	Q03828	476 aa		10.52	□□□□□ -0.73
SMARCA2-233	ENST00000635030	PROM2	Q8N271	834 aa		10.51	□□□□□ -0.73
SMARCA2-233	ENST00000635030	CREBZF	Q9NS37	354 aa		10.51	□□□□□ -0.73
SMARCA2-233	ENST00000635030	C19orf67	A6NJJ6	358 aa		10.49	□□□□□ -0.73
SMARCA2-233	ENST00000635030	CD44	P16070	742 aa	Known RBP	10.45	□□□□□ -0.74
SMARCA2-233	ENST00000635030	PLEKHG5	O94827	1062 aa		10.4	□□□□□ -0.74
SMARCA2-233	ENST00000635030	MIER1	Q8N108	512 aa		10.4	□□□□□ -0.74
SMARCA2-233	ENST00000635030	NPM1	P06748	294 aa	Known RBP eCLIP	10.39	□□□□□ -0.75
SMARCA2-233	ENST00000635030	PLCD3	Q8N3E9	789 aa		10.35	□□□□□ -0.75
SMARCA2-233	ENST00000635030	ZRANB1	Q9UGI0	708 aa		10.35	□□□□□ -0.75
SMARCA2-233	ENST00000635030	PAK3	O75914	559 aa	Predicted RBP	10.34	□□□□□ -0.75
SMARCA2-233	ENST00000635030	GABBR2	O75899	941 aa		10.32	□□□□□ -0.76
SMARCA2-233	ENST00000635030	MNX1	P50219	401 aa	Predicted RBP	10.32	□□□□□ -0.76
SMARCA2-233	ENST00000635030	FBXO3	Q9UK99	471 aa		10.28	□□□□□ -0.76
SMARCA2-233	ENST00000635030	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.24	□□□□□ -0.77
SMARCA2-233	ENST00000635030	ZNF579	Q8NAF0	562 aa	Known RBP	10.23	□□□□□ -0.77
SMARCA2-233	ENST00000635030	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.22	□□□□□ -0.77
SMARCA2-233	ENST00000635030	CLCN6	P51797	869 aa		10.2	□□□□□ -0.78
SMARCA2-233	ENST00000635030	PHF12	Q96QT6	1004 aa		10.19	□□□□□ -0.78
SMARCA2-233	ENST00000635030	DCBLD2	Q96PD2	775 aa		10.16	□□□□□ -0.78
SMARCA2-233	ENST00000635030	GALR2	O43603	387 aa	Predicted RBP	10.13	□□□□□ -0.79
SMARCA2-233	ENST00000635030	RASEF	Q8IZ41	740 aa		10.13	□□□□□ -0.79
SMARCA2-233	ENST00000635030	KLHL34	Q8N239	644 aa		10.12	□□□□□ -0.79

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