RNA–Protein interactions for RNA: ENST00000632629.1

NPHP3-ACAD11-202, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

APPRIS P1 TSL 2

Gene NPHP3-ACAD11, Length 695 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-202ENST00000632629 AEBP2Q6ZN18 517 aaPredicted RBP23.16■■□□□ 1.3
NPHP3-ACAD11-202ENST00000632629 CHIC1Q5VXU3 224 aa21.61■■□□□ 1.05
NPHP3-ACAD11-202ENST00000632629 SENP3Q9H4L4 574 aaPredicted RBP19.81■□□□□ 0.76
NPHP3-ACAD11-202ENST00000632629 PHF23Q9BUL5 403 aaPredicted RBP19.51■□□□□ 0.71
NPHP3-ACAD11-202ENST00000632629 FOXD1Q16676 465 aa18.53■□□□□ 0.56
NPHP3-ACAD11-202ENST00000632629 POTEDQ86YR6 584 aa17.88■□□□□ 0.45
NPHP3-ACAD11-202ENST00000632629 MSH5O43196 834 aa17.5■□□□□ 0.39
NPHP3-ACAD11-202ENST00000632629 PIAS4Q8N2W9 510 aaPredicted RBP17.2■□□□□ 0.34
NPHP3-ACAD11-202ENST00000632629 PLPPR3Q6T4P5 718 aa17■□□□□ 0.31
NPHP3-ACAD11-202ENST00000632629 PPP6R1Q9UPN7 881 aa16.99■□□□□ 0.31
NPHP3-ACAD11-202ENST00000632629 ADRA2BP18089 450 aa16.91■□□□□ 0.3
NPHP3-ACAD11-202ENST00000632629 MAPK8IP2Q13387 824 aaPredicted RBP15.68■□□□□ 0.1
NPHP3-ACAD11-202ENST00000632629 DMRT2Q9Y5R5 561 aa15.64■□□□□ 0.09
NPHP3-ACAD11-202ENST00000632629 SCAF1Q9H7N4 1312 aaKnown RBP15.45■□□□□ 0.06
NPHP3-ACAD11-202ENST00000632629 CACNB1Q02641 598 aaPredicted RBP15.31■□□□□ 0.04
NPHP3-ACAD11-202ENST00000632629 DCAF8L1A6NGE4 600 aa15.04■□□□□ -0
NPHP3-ACAD11-202ENST00000632629 RNF39Q9H2S5 420 aa14.9□□□□□ -0.02
NPHP3-ACAD11-202ENST00000632629 HOXD11P31277 338 aaPredicted RBP14.88□□□□□ -0.03
NPHP3-ACAD11-202ENST00000632629 PPP4R3CPQ6ZMV5 832 aa14.85□□□□□ -0.03
NPHP3-ACAD11-202ENST00000632629 CNKSR2Q8WXI2 1034 aa14.67□□□□□ -0.06
NPHP3-ACAD11-202ENST00000632629 C1QBPQ07021 282 aaKnown RBP14.66□□□□□ -0.06
NPHP3-ACAD11-202ENST00000632629 RNF216Q9NWF9 866 aaPredicted RBP14.65□□□□□ -0.06
NPHP3-ACAD11-202ENST00000632629 DNAJC5BQ9UF47 199 aa14.44□□□□□ -0.1
NPHP3-ACAD11-202ENST00000632629 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.19□□□□□ -0.14
NPHP3-ACAD11-202ENST00000632629 NCBP3Q53F19 620 aaKnown RBP14.13□□□□□ -0.15
NPHP3-ACAD11-202ENST00000632629 NPM3O75607 178 aaKnown RBP13.94□□□□□ -0.18
NPHP3-ACAD11-202ENST00000632629 POTEHQ6S545 545 aa13.91□□□□□ -0.18
NPHP3-ACAD11-202ENST00000632629 U3KPZ7 1027 aaPredicted RBP13.84□□□□□ -0.19
NPHP3-ACAD11-202ENST00000632629 DSG3P32926 999 aa13.8□□□□□ -0.2
NPHP3-ACAD11-202ENST00000632629 SPINK5Q9NQ38 1064 aaPredicted RBP13.79□□□□□ -0.2
NPHP3-ACAD11-202ENST00000632629 CAPN15O75808 1086 aa13.78□□□□□ -0.2
NPHP3-ACAD11-202ENST00000632629 TRHP20396 242 aaPredicted RBP13.45□□□□□ -0.26
NPHP3-ACAD11-202ENST00000632629 ABCB7O75027 752 aa13.43□□□□□ -0.26
NPHP3-ACAD11-202ENST00000632629 SLC4A2P04920 1241 aa13.43□□□□□ -0.26
NPHP3-ACAD11-202ENST00000632629 ZNF219Q9P2Y4 722 aaPredicted RBP13.39□□□□□ -0.27
NPHP3-ACAD11-202ENST00000632629 APLP2Q06481 763 aa13.38□□□□□ -0.27
NPHP3-ACAD11-202ENST00000632629 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.27□□□□□ -0.29
NPHP3-ACAD11-202ENST00000632629 KCNA4P22459 653 aa13.27□□□□□ -0.29
NPHP3-ACAD11-202ENST00000632629 HNRNPUL2Q1KMD3 747 aaKnown RBP13.27□□□□□ -0.29
NPHP3-ACAD11-202ENST00000632629 SAMD1Q6SPF0 538 aaPredicted RBP13.17□□□□□ -0.3
NPHP3-ACAD11-202ENST00000632629 RBM42Q9BTD8 480 aaKnown RBP13.16□□□□□ -0.3
NPHP3-ACAD11-202ENST00000632629 CHRDL2Q6WN34 429 aa13.07□□□□□ -0.32
NPHP3-ACAD11-202ENST00000632629 POLA2Q14181 598 aa12.99□□□□□ -0.33
NPHP3-ACAD11-202ENST00000632629 MYCNP04198 464 aaPredicted RBP12.88□□□□□ -0.35
NPHP3-ACAD11-202ENST00000632629 SP7Q8TDD2 431 aaPredicted RBP12.83□□□□□ -0.36
NPHP3-ACAD11-202ENST00000632629 AKT1S1Q96B36 256 aa12.78□□□□□ -0.36
NPHP3-ACAD11-202ENST00000632629 REM2Q8IYK8 340 aaPredicted RBP12.67□□□□□ -0.38
NPHP3-ACAD11-202ENST00000632629 PIP4P2Q8N4L2 257 aa12.66□□□□□ -0.38
NPHP3-ACAD11-202ENST00000632629 ATF5Q9Y2D1 282 aaPredicted RBP12.65□□□□□ -0.38
NPHP3-ACAD11-202ENST00000632629 ZBTB12Q9Y330 459 aaPredicted RBP12.65□□□□□ -0.38
NPHP3-ACAD11-202ENST00000632629 OSCARQ8IYS5 282 aa12.59□□□□□ -0.39
NPHP3-ACAD11-202ENST00000632629 HAX1O00165 279 aa12.58□□□□□ -0.4
NPHP3-ACAD11-202ENST00000632629 PITPNM1O00562 1244 aa12.53□□□□□ -0.4
NPHP3-ACAD11-202ENST00000632629 FXR2P51116 673 aaKnown RBP eCLIP12.52□□□□□ -0.41
NPHP3-ACAD11-202ENST00000632629 FOXD4L1Q9NU39 408 aa12.51□□□□□ -0.41
NPHP3-ACAD11-202ENST00000632629 SLC4A1APQ9BWU0 796 aaKnown RBP12.42□□□□□ -0.42
NPHP3-ACAD11-202ENST00000632629 EVX2Q03828 476 aa12.39□□□□□ -0.43
NPHP3-ACAD11-202ENST00000632629 SPDYE2BA6NHP3 402 aa12.24□□□□□ -0.45
NPHP3-ACAD11-202ENST00000632629 SPDYE6P0CI01 402 aa12.24□□□□□ -0.45
NPHP3-ACAD11-202ENST00000632629 SPDYE2Q495Y8 402 aa12.24□□□□□ -0.45
NPHP3-ACAD11-202ENST00000632629 PRKAR2AP13861 404 aaKnown RBP12.21□□□□□ -0.45
NPHP3-ACAD11-202ENST00000632629 ZBTB22O15209 634 aa12.19□□□□□ -0.46
NPHP3-ACAD11-202ENST00000632629 FBLN2P98095 1184 aa12.17□□□□□ -0.46
NPHP3-ACAD11-202ENST00000632629 CLEC11AQ9Y240 323 aa12.17□□□□□ -0.46
NPHP3-ACAD11-202ENST00000632629 ATXN8OSP0DMR3 200 aa12.16□□□□□ -0.46
NPHP3-ACAD11-202ENST00000632629 SPDYE1Q8NFV5 336 aaPredicted RBP12.15□□□□□ -0.46
NPHP3-ACAD11-202ENST00000632629 C19orf67A6NJJ6 358 aa12.13□□□□□ -0.47
NPHP3-ACAD11-202ENST00000632629 GABBR2O75899 941 aa12.07□□□□□ -0.48
NPHP3-ACAD11-202ENST00000632629 LHX8Q68G74 356 aa12.04□□□□□ -0.48
NPHP3-ACAD11-202ENST00000632629 ZNF692Q9BU19 519 aaPredicted RBP12.04□□□□□ -0.48
NPHP3-ACAD11-202ENST00000632629 MKRN4PQ13434 485 aaPredicted RBP12.03□□□□□ -0.48
NPHP3-ACAD11-202ENST00000632629 SSUH2Q9Y2M2 353 aa12.02□□□□□ -0.49
NPHP3-ACAD11-202ENST00000632629 CHADLQ6NUI6 762 aa11.99□□□□□ -0.49
NPHP3-ACAD11-202ENST00000632629 PRR29P0C7W0 189 aa11.89□□□□□ -0.51
NPHP3-ACAD11-202ENST00000632629 PABPN1Q86U42 306 aaKnown RBP eCLIP11.84□□□□□ -0.51
NPHP3-ACAD11-202ENST00000632629 POTEIP0CG38 1075 aa11.82□□□□□ -0.52
NPHP3-ACAD11-202ENST00000632629 CD44P16070 742 aaKnown RBP11.79□□□□□ -0.52
NPHP3-ACAD11-202ENST00000632629 FARP1Q9Y4F1 1045 aaPredicted RBP11.75□□□□□ -0.53
NPHP3-ACAD11-202ENST00000632629 CLCN6P51797 869 aa11.71□□□□□ -0.53
NPHP3-ACAD11-202ENST00000632629 DCBLD2Q96PD2 775 aa11.65□□□□□ -0.54
NPHP3-ACAD11-202ENST00000632629 PLSCR2Q9NRY7 297 aa11.65□□□□□ -0.54
NPHP3-ACAD11-202ENST00000632629 ZNF579Q8NAF0 562 aaKnown RBP11.58□□□□□ -0.56
NPHP3-ACAD11-202ENST00000632629 ZRANB1Q9UGI0 708 aa11.56□□□□□ -0.56
NPHP3-ACAD11-202ENST00000632629 CREBZFQ9NS37 354 aa11.49□□□□□ -0.57
NPHP3-ACAD11-202ENST00000632629 GALR2O43603 387 aaPredicted RBP11.48□□□□□ -0.57
NPHP3-ACAD11-202ENST00000632629 OTUD5Q96G74 571 aa11.48□□□□□ -0.57
NPHP3-ACAD11-202ENST00000632629 POTEB2H3BUK9 544 aa11.43□□□□□ -0.58
NPHP3-ACAD11-202ENST00000632629 STAG3Q9UJ98 1225 aa11.41□□□□□ -0.58
NPHP3-ACAD11-202ENST00000632629 PAK3O75914 559 aaPredicted RBP11.36□□□□□ -0.59
NPHP3-ACAD11-202ENST00000632629 PHF12Q96QT6 1004 aa11.36□□□□□ -0.59
NPHP3-ACAD11-202ENST00000632629 POTEMA6NI47 508 aa11.35□□□□□ -0.59
NPHP3-ACAD11-202ENST00000632629 PELP1Q8IZL8 1130 aaKnown RBP11.32□□□□□ -0.6
NPHP3-ACAD11-202ENST00000632629 POTEGQ6S5H5 508 aa11.3□□□□□ -0.6
NPHP3-ACAD11-202ENST00000632629 NPM1P06748 294 aaKnown RBP eCLIP11.26□□□□□ -0.61
NPHP3-ACAD11-202ENST00000632629 SPDYE4A6NLX3 237 aa11.23□□□□□ -0.61
NPHP3-ACAD11-202ENST00000632629 MNX1P50219 401 aaPredicted RBP11.23□□□□□ -0.61
NPHP3-ACAD11-202ENST00000632629 CSRNP3Q8WYN3 585 aa11.22□□□□□ -0.61
NPHP3-ACAD11-202ENST00000632629 METRNQ9UJH8 293 aa11.22□□□□□ -0.61
NPHP3-ACAD11-202ENST00000632629 ASTLQ6HA08 431 aaPredicted RBP11.21□□□□□ -0.61
NPHP3-ACAD11-202ENST00000632629 POTEJP0CG39 1038 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms