RNA–Protein interactions for RNA: ENST00000624700.3

CDKL5-207, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 4

Gene CDKL5, Length 564 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-207ENST00000624700 AEBP2Q6ZN18 517 aaPredicted RBP24.35■■□□□ 1.49
CDKL5-207ENST00000624700 CHIC1Q5VXU3 224 aa23.17■■□□□ 1.3
CDKL5-207ENST00000624700 SENP3Q9H4L4 574 aaPredicted RBP20.81■□□□□ 0.92
CDKL5-207ENST00000624700 PHF23Q9BUL5 403 aaPredicted RBP20.53■□□□□ 0.88
CDKL5-207ENST00000624700 FOXD1Q16676 465 aa19.36■□□□□ 0.69
CDKL5-207ENST00000624700 PLPPR3Q6T4P5 718 aa18.53■□□□□ 0.56
CDKL5-207ENST00000624700 MSH5O43196 834 aa18.14■□□□□ 0.49
CDKL5-207ENST00000624700 PIAS4Q8N2W9 510 aaPredicted RBP18.11■□□□□ 0.49
CDKL5-207ENST00000624700 PPP6R1Q9UPN7 881 aa18.11■□□□□ 0.49
CDKL5-207ENST00000624700 ADRA2BP18089 450 aa18.07■□□□□ 0.48
CDKL5-207ENST00000624700 POTEDQ86YR6 584 aa17.64■□□□□ 0.41
CDKL5-207ENST00000624700 MAPK8IP2Q13387 824 aaPredicted RBP16.58■□□□□ 0.24
CDKL5-207ENST00000624700 SCAF1Q9H7N4 1312 aaKnown RBP16.58■□□□□ 0.24
CDKL5-207ENST00000624700 DMRT2Q9Y5R5 561 aa16.5■□□□□ 0.23
CDKL5-207ENST00000624700 PPP4R3CPQ6ZMV5 832 aa16.24■□□□□ 0.19
CDKL5-207ENST00000624700 CNKSR2Q8WXI2 1034 aa15.94■□□□□ 0.14
CDKL5-207ENST00000624700 HOXD11P31277 338 aaPredicted RBP15.9■□□□□ 0.14
CDKL5-207ENST00000624700 DCAF8L1A6NGE4 600 aa15.81■□□□□ 0.12
CDKL5-207ENST00000624700 RNF216Q9NWF9 866 aaPredicted RBP15.79■□□□□ 0.12
CDKL5-207ENST00000624700 NCBP3Q53F19 620 aaKnown RBP15.65■□□□□ 0.1
CDKL5-207ENST00000624700 CACNB1Q02641 598 aaPredicted RBP15.55■□□□□ 0.08
CDKL5-207ENST00000624700 RNF39Q9H2S5 420 aa15.47■□□□□ 0.07
CDKL5-207ENST00000624700 NPM3O75607 178 aaKnown RBP15.38■□□□□ 0.05
CDKL5-207ENST00000624700 DNAJC5BQ9UF47 199 aa15.37■□□□□ 0.05
CDKL5-207ENST00000624700 C1QBPQ07021 282 aaKnown RBP15.26■□□□□ 0.03
CDKL5-207ENST00000624700 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.16■□□□□ 0.02
CDKL5-207ENST00000624700 KCNA4P22459 653 aa15.11■□□□□ 0.01
CDKL5-207ENST00000624700 U3KPZ7 1027 aaPredicted RBP14.82□□□□□ -0.04
CDKL5-207ENST00000624700 SLC4A2P04920 1241 aa14.68□□□□□ -0.06
CDKL5-207ENST00000624700 SPINK5Q9NQ38 1064 aaPredicted RBP14.59□□□□□ -0.07
CDKL5-207ENST00000624700 CAPN15O75808 1086 aa14.58□□□□□ -0.08
CDKL5-207ENST00000624700 DSG3P32926 999 aa14.49□□□□□ -0.09
CDKL5-207ENST00000624700 APLP2Q06481 763 aa14.46□□□□□ -0.09
CDKL5-207ENST00000624700 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.45□□□□□ -0.1
CDKL5-207ENST00000624700 HNRNPUL2Q1KMD3 747 aaKnown RBP14.45□□□□□ -0.1
CDKL5-207ENST00000624700 SAMD1Q6SPF0 538 aaPredicted RBP14.37□□□□□ -0.11
CDKL5-207ENST00000624700 TRHP20396 242 aaPredicted RBP14.35□□□□□ -0.11
CDKL5-207ENST00000624700 ZNF219Q9P2Y4 722 aaPredicted RBP14.34□□□□□ -0.11
CDKL5-207ENST00000624700 SLC4A1APQ9BWU0 796 aaKnown RBP14.28□□□□□ -0.12
CDKL5-207ENST00000624700 MYCNP04198 464 aaPredicted RBP14.25□□□□□ -0.13
CDKL5-207ENST00000624700 ABCB7O75027 752 aa14.23□□□□□ -0.13
CDKL5-207ENST00000624700 FOXD4L1Q9NU39 408 aa14.1□□□□□ -0.15
CDKL5-207ENST00000624700 POLA2Q14181 598 aa13.98□□□□□ -0.17
CDKL5-207ENST00000624700 ZBTB22O15209 634 aa13.88□□□□□ -0.19
CDKL5-207ENST00000624700 ATF5Q9Y2D1 282 aaPredicted RBP13.88□□□□□ -0.19
CDKL5-207ENST00000624700 RBM42Q9BTD8 480 aaKnown RBP13.85□□□□□ -0.19
CDKL5-207ENST00000624700 POTEHQ6S545 545 aa13.83□□□□□ -0.2
CDKL5-207ENST00000624700 ZBTB12Q9Y330 459 aaPredicted RBP13.73□□□□□ -0.21
CDKL5-207ENST00000624700 ATXN8OSP0DMR3 200 aa13.7□□□□□ -0.22
CDKL5-207ENST00000624700 CHRDL2Q6WN34 429 aa13.53□□□□□ -0.24
CDKL5-207ENST00000624700 AKT1S1Q96B36 256 aa13.53□□□□□ -0.24
CDKL5-207ENST00000624700 OSCARQ8IYS5 282 aa13.52□□□□□ -0.25
CDKL5-207ENST00000624700 EHMT2Q96KQ7 1210 aa13.44□□□□□ -0.26
CDKL5-207ENST00000624700 REM2Q8IYK8 340 aaPredicted RBP13.4□□□□□ -0.26
CDKL5-207ENST00000624700 FBLN2P98095 1184 aa13.39□□□□□ -0.27
CDKL5-207ENST00000624700 SPDYE2BA6NHP3 402 aa13.29□□□□□ -0.28
CDKL5-207ENST00000624700 SPDYE6P0CI01 402 aa13.29□□□□□ -0.28
CDKL5-207ENST00000624700 SPDYE2Q495Y8 402 aa13.29□□□□□ -0.28
CDKL5-207ENST00000624700 CSRNP3Q8WYN3 585 aa13.27□□□□□ -0.29
CDKL5-207ENST00000624700 MKRN4PQ13434 485 aaPredicted RBP13.25□□□□□ -0.29
CDKL5-207ENST00000624700 PITPNM1O00562 1244 aa13.24□□□□□ -0.29
CDKL5-207ENST00000624700 PIP4P2Q8N4L2 257 aa13.2□□□□□ -0.3
CDKL5-207ENST00000624700 FXR2P51116 673 aaKnown RBP eCLIP13.13□□□□□ -0.31
CDKL5-207ENST00000624700 ZNF692Q9BU19 519 aaPredicted RBP13.13□□□□□ -0.31
CDKL5-207ENST00000624700 SSUH2Q9Y2M2 353 aa13.1□□□□□ -0.31
CDKL5-207ENST00000624700 SPDYE1Q8NFV5 336 aaPredicted RBP13.06□□□□□ -0.32
CDKL5-207ENST00000624700 CLEC11AQ9Y240 323 aa13.01□□□□□ -0.33
CDKL5-207ENST00000624700 SP7Q8TDD2 431 aaPredicted RBP12.99□□□□□ -0.33
CDKL5-207ENST00000624700 HAX1O00165 279 aa12.97□□□□□ -0.33
CDKL5-207ENST00000624700 PABPN1Q86U42 306 aaKnown RBP eCLIP12.93□□□□□ -0.34
CDKL5-207ENST00000624700 PRKAR2AP13861 404 aaKnown RBP12.9□□□□□ -0.34
CDKL5-207ENST00000624700 PRR29P0C7W0 189 aa12.82□□□□□ -0.36
CDKL5-207ENST00000624700 EVX2Q03828 476 aa12.78□□□□□ -0.36
CDKL5-207ENST00000624700 CHADLQ6NUI6 762 aa12.74□□□□□ -0.37
CDKL5-207ENST00000624700 C19orf67A6NJJ6 358 aa12.71□□□□□ -0.37
CDKL5-207ENST00000624700 SPDYE4A6NLX3 237 aa12.66□□□□□ -0.38
CDKL5-207ENST00000624700 STAG3Q9UJ98 1225 aa12.61□□□□□ -0.39
CDKL5-207ENST00000624700 FARP1Q9Y4F1 1045 aaPredicted RBP12.59□□□□□ -0.39
CDKL5-207ENST00000624700 GABBR2O75899 941 aa12.51□□□□□ -0.41
CDKL5-207ENST00000624700 CD44P16070 742 aaKnown RBP12.5□□□□□ -0.41
CDKL5-207ENST00000624700 CREBZFQ9NS37 354 aa12.48□□□□□ -0.41
CDKL5-207ENST00000624700 CLCN6P51797 869 aa12.37□□□□□ -0.43
CDKL5-207ENST00000624700 PROM2Q8N271 834 aa12.35□□□□□ -0.43
CDKL5-207ENST00000624700 ZRANB1Q9UGI0 708 aa12.32□□□□□ -0.44
CDKL5-207ENST00000624700 ZNF579Q8NAF0 562 aaKnown RBP12.31□□□□□ -0.44
CDKL5-207ENST00000624700 NPM1P06748 294 aaKnown RBP eCLIP12.29□□□□□ -0.44
CDKL5-207ENST00000624700 MNX1P50219 401 aaPredicted RBP12.26□□□□□ -0.45
CDKL5-207ENST00000624700 PAK3O75914 559 aaPredicted RBP12.25□□□□□ -0.45
CDKL5-207ENST00000624700 POTEIP0CG38 1075 aa12.22□□□□□ -0.45
CDKL5-207ENST00000624700 DCBLD2Q96PD2 775 aa12.2□□□□□ -0.46
CDKL5-207ENST00000624700 LHX8Q68G74 356 aa12.18□□□□□ -0.46
CDKL5-207ENST00000624700 PHF12Q96QT6 1004 aa12.15□□□□□ -0.46
CDKL5-207ENST00000624700 GALR2O43603 387 aaPredicted RBP12.14□□□□□ -0.47
CDKL5-207ENST00000624700 PLEKHG5O94827 1062 aa12.1□□□□□ -0.47
CDKL5-207ENST00000624700 MIER1Q8N108 512 aa12.09□□□□□ -0.47
CDKL5-207ENST00000624700 FKBP8Q14318 412 aa12.04□□□□□ -0.48
CDKL5-207ENST00000624700 TSPYL2Q9H2G4 693 aaPredicted RBP12.04□□□□□ -0.48
CDKL5-207ENST00000624700 PLCD3Q8N3E9 789 aa12□□□□□ -0.49
CDKL5-207ENST00000624700 MS4A3Q96HJ5 214 aa11.98□□□□□ -0.49
CDKL5-207ENST00000624700 CCDC61Q9Y6R9 512 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms