RNA–Protein interactions for RNA: ENST00000623610.1

CDKL5-206, Transcript of cyclin dependent kinase like 5, humanhuman

Gene CDKL5, Length 2,130 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-206ENST00000623610 CHIC1Q5VXU3 224 aa19.05■□□□□ 0.64
CDKL5-206ENST00000623610 AEBP2Q6ZN18 517 aaPredicted RBP18.84■□□□□ 0.61
CDKL5-206ENST00000623610 SLC24A1O60721 1099 aa17.92■□□□□ 0.46
CDKL5-206ENST00000623610 PHF23Q9BUL5 403 aaPredicted RBP17.03■□□□□ 0.32
CDKL5-206ENST00000623610 EHMT2Q96KQ7 1210 aa16.52■□□□□ 0.23
CDKL5-206ENST00000623610 NISCHQ9Y2I1 1504 aa16.34■□□□□ 0.21
CDKL5-206ENST00000623610 DAXXQ9UER7 740 aaPredicted RBP16.28■□□□□ 0.2
CDKL5-206ENST00000623610 PLPPR3Q6T4P5 718 aa16.16■□□□□ 0.18
CDKL5-206ENST00000623610 RTN4Q9NQC3 1192 aaKnown RBP16.06■□□□□ 0.16
CDKL5-206ENST00000623610 NCBP3Q53F19 620 aaKnown RBP15.93■□□□□ 0.14
CDKL5-206ENST00000623610 TTBK1Q5TCY1 1321 aaPredicted RBP15.68■□□□□ 0.1
CDKL5-206ENST00000623610 MYT1Q01538 1121 aa15.64■□□□□ 0.09
CDKL5-206ENST00000623610 AMER1Q5JTC6 1135 aaPredicted RBP15.63■□□□□ 0.09
CDKL5-206ENST00000623610 APLP2Q06481 763 aa15.57■□□□□ 0.08
CDKL5-206ENST00000623610 SENP3Q9H4L4 574 aaPredicted RBP15.55■□□□□ 0.08
CDKL5-206ENST00000623610 PRKCSHP14314 528 aaPredicted RBP15.51■□□□□ 0.07
CDKL5-206ENST00000623610 PELP1Q8IZL8 1130 aaKnown RBP15.49■□□□□ 0.07
CDKL5-206ENST00000623610 KCNA4P22459 653 aa15.44■□□□□ 0.06
CDKL5-206ENST00000623610 ERICH6Q7L0X2 663 aa15.37■□□□□ 0.05
CDKL5-206ENST00000623610 CSRNP3Q8WYN3 585 aa15.31■□□□□ 0.04
CDKL5-206ENST00000623610 ARXQ96QS3 562 aa15.31■□□□□ 0.04
CDKL5-206ENST00000623610 TIMELESSQ9UNS1 1208 aa15.2■□□□□ 0.02
CDKL5-206ENST00000623610 ADRA2BP18089 450 aa15.05■□□□□ -0
CDKL5-206ENST00000623610 TULP1O00294 542 aaPredicted RBP14.94□□□□□ -0.02
CDKL5-206ENST00000623610 RANGAP1P46060 587 aaPredicted RBP14.92□□□□□ -0.02
CDKL5-206ENST00000623610 TAOK2Q9UL54 1235 aa14.92□□□□□ -0.02
CDKL5-206ENST00000623610 HOMEZQ8IX15 550 aa14.83□□□□□ -0.04
CDKL5-206ENST00000623610 PPP6R1Q9UPN7 881 aa14.79□□□□□ -0.04
CDKL5-206ENST00000623610 KLHL34Q8N239 644 aa14.7□□□□□ -0.06
CDKL5-206ENST00000623610 BCANQ96GW7 911 aa14.68□□□□□ -0.06
CDKL5-206ENST00000623610 TPRNQ4KMQ1 711 aa14.67□□□□□ -0.06
CDKL5-206ENST00000623610 EIF5BO60841 1220 aaKnown RBP14.63□□□□□ -0.07
CDKL5-206ENST00000623610 PODXL2Q9NZ53 605 aa14.58□□□□□ -0.08
CDKL5-206ENST00000623610 FOXD1Q16676 465 aa14.53□□□□□ -0.08
CDKL5-206ENST00000623610 CCDC180Q9P1Z9 1646 aa14.49□□□□□ -0.09
CDKL5-206ENST00000623610 SLC4A1APQ9BWU0 796 aaKnown RBP14.44□□□□□ -0.1
CDKL5-206ENST00000623610 GTF3C3Q9Y5Q9 886 aa14.44□□□□□ -0.1
CDKL5-206ENST00000623610 PLCB2Q00722 1185 aa14.41□□□□□ -0.1
CDKL5-206ENST00000623610 HAP1P54257 671 aaPredicted RBP14.28□□□□□ -0.12
CDKL5-206ENST00000623610 NPM2Q86SE8 214 aaKnown RBP14.24□□□□□ -0.13
CDKL5-206ENST00000623610 POTEDQ86YR6 584 aa14.24□□□□□ -0.13
CDKL5-206ENST00000623610 ABCC9O60706 1549 aa14.23□□□□□ -0.13
CDKL5-206ENST00000623610 PLEKHG5O94827 1062 aa14.17□□□□□ -0.14
CDKL5-206ENST00000623610 TMEM132AQ24JP5 1023 aa14.12□□□□□ -0.15
CDKL5-206ENST00000623610 PPP4R3CPQ6ZMV5 832 aa14.1□□□□□ -0.15
CDKL5-206ENST00000623610 C14orf37Q86TY3 774 aa14.08□□□□□ -0.16
CDKL5-206ENST00000623610 FBXO3Q9UK99 471 aa13.97□□□□□ -0.17
CDKL5-206ENST00000623610 ZBTB22O15209 634 aa13.95□□□□□ -0.18
CDKL5-206ENST00000623610 TRIM26Q12899 539 aaPredicted RBP13.93□□□□□ -0.18
CDKL5-206ENST00000623610 VSIG10Q8N0Z9 540 aa13.89□□□□□ -0.19
CDKL5-206ENST00000623610 NPM3O75607 178 aaKnown RBP13.84□□□□□ -0.19
CDKL5-206ENST00000623610 PIAS4Q8N2W9 510 aaPredicted RBP13.83□□□□□ -0.2
CDKL5-206ENST00000623610 SUPT5HO00267 1087 aaKnown RBP13.81□□□□□ -0.2
CDKL5-206ENST00000623610 LOC105371045A0A1W2PR82 267 aa13.8□□□□□ -0.2
CDKL5-206ENST00000623610 KDM2AQ9Y2K7 1162 aa13.79□□□□□ -0.2
CDKL5-206ENST00000623610 HRCP23327 699 aa13.73□□□□□ -0.21
CDKL5-206ENST00000623610 UBTFP17480 764 aaKnown RBP13.73□□□□□ -0.21
CDKL5-206ENST00000623610 DCAF8L2P0C7V8 631 aa13.72□□□□□ -0.21
CDKL5-206ENST00000623610 FKBP8Q14318 412 aa13.69□□□□□ -0.22
CDKL5-206ENST00000623610 BCL11AQ9H165 835 aa13.69□□□□□ -0.22
CDKL5-206ENST00000623610 FBLN2P98095 1184 aa13.67□□□□□ -0.22
CDKL5-206ENST00000623610 RB1CC1Q8TDY2 1594 aa13.64□□□□□ -0.23
CDKL5-206ENST00000623610 NACADO15069 1562 aa13.62□□□□□ -0.23
CDKL5-206ENST00000623610 ZCCHC6Q5VYS8 1495 aaKnown RBP13.61□□□□□ -0.23
CDKL5-206ENST00000623610 PDIA4P13667 645 aaKnown RBP13.57□□□□□ -0.24
CDKL5-206ENST00000623610 MYO15BQ96JP2 1530 aa13.52□□□□□ -0.24
CDKL5-206ENST00000623610 CHMP4AQ9BY43 222 aa13.51□□□□□ -0.25
CDKL5-206ENST00000623610 DCAF1Q9Y4B6 1507 aa13.48□□□□□ -0.25
CDKL5-206ENST00000623610 UBE2Q2Q8WVN8 375 aa13.42□□□□□ -0.26
CDKL5-206ENST00000623610 CNKSR2Q8WXI2 1034 aa13.42□□□□□ -0.26
CDKL5-206ENST00000623610 SAMD1Q6SPF0 538 aaPredicted RBP13.4□□□□□ -0.26
CDKL5-206ENST00000623610 CDK11BP21127 795 aaKnown RBP13.38□□□□□ -0.27
CDKL5-206ENST00000623610 CDK11AQ9UQ88 783 aaPredicted RBP13.38□□□□□ -0.27
CDKL5-206ENST00000623610 UNC13AQ9UPW8 1703 aa13.38□□□□□ -0.27
CDKL5-206ENST00000623610 FAM9AQ8IZU1 332 aaPredicted RBP13.36□□□□□ -0.27
CDKL5-206ENST00000623610 IGSF3O75054 1194 aa13.32□□□□□ -0.28
CDKL5-206ENST00000623610 PABPN1Q86U42 306 aaKnown RBP eCLIP13.31□□□□□ -0.28
CDKL5-206ENST00000623610 DHX37Q8IY37 1157 aaKnown RBP13.28□□□□□ -0.28
CDKL5-206ENST00000623610 FOXD4L1Q9NU39 408 aa13.28□□□□□ -0.28
CDKL5-206ENST00000623610 SCRIBQ14160 1630 aa13.28□□□□□ -0.28
CDKL5-206ENST00000623610 BICRAQ9NZM4 1560 aa13.26□□□□□ -0.29
CDKL5-206ENST00000623610 PDE4CQ08493 712 aa13.25□□□□□ -0.29
CDKL5-206ENST00000623610 SHROOM4Q9ULL8 1493 aa13.23□□□□□ -0.29
CDKL5-206ENST00000623610 BRD2P25440 801 aaKnown RBP13.2□□□□□ -0.3
CDKL5-206ENST00000623610 MAPK8IP2Q13387 824 aaPredicted RBP13.19□□□□□ -0.3
CDKL5-206ENST00000623610 NBR1Q14596 966 aa13.17□□□□□ -0.3
CDKL5-206ENST00000623610 CCDC9Q9Y3X0 531 aaKnown RBP13.16□□□□□ -0.3
CDKL5-206ENST00000623610 SCAF1Q9H7N4 1312 aaKnown RBP13.15□□□□□ -0.3
CDKL5-206ENST00000623610 HSP90B1P14625 803 aaKnown RBP13.15□□□□□ -0.3
CDKL5-206ENST00000623610 DNAJC5BQ9UF47 199 aa13.11□□□□□ -0.31
CDKL5-206ENST00000623610 TAF7LQ5H9L4 462 aa13.1□□□□□ -0.31
CDKL5-206ENST00000623610 HMGB1P09429 215 aaKnown RBP13.09□□□□□ -0.31
CDKL5-206ENST00000623610 PAXIP1Q6ZW49 1069 aaPredicted RBP13.08□□□□□ -0.32
CDKL5-206ENST00000623610 CFAP44Q96MT7 982 aa13.06□□□□□ -0.32
CDKL5-206ENST00000623610 NEFLP07196 543 aa13.04□□□□□ -0.32
CDKL5-206ENST00000623610 TSHZ2Q9NRE2 1034 aa13.04□□□□□ -0.32
CDKL5-206ENST00000623610 ARID3AQ99856 593 aa12.97□□□□□ -0.33
CDKL5-206ENST00000623610 PUS7Q96PZ0 661 aaKnown RBP12.97□□□□□ -0.33
CDKL5-206ENST00000623610 RNF216Q9NWF9 866 aaPredicted RBP12.95□□□□□ -0.34
CDKL5-206ENST00000623610 NECTIN2Q92692 538 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms