RNA–Protein interactions for RNA: ENST00000618606.1

TARDBP-220, Transcript of TAR DNA binding protein, humanhuman

TSL 2

Gene TARDBP, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-220ENST00000618606 AEBP2Q6ZN18 517 aaPredicted RBP24.78■■□□□ 1.56
TARDBP-220ENST00000618606 CHIC1Q5VXU3 224 aa23.33■■□□□ 1.33
TARDBP-220ENST00000618606 SENP3Q9H4L4 574 aaPredicted RBP21.21■□□□□ 0.99
TARDBP-220ENST00000618606 PHF23Q9BUL5 403 aaPredicted RBP20.88■□□□□ 0.93
TARDBP-220ENST00000618606 FOXD1Q16676 465 aa19.77■□□□□ 0.76
TARDBP-220ENST00000618606 MSH5O43196 834 aa18.63■□□□□ 0.57
TARDBP-220ENST00000618606 POTEDQ86YR6 584 aa18.56■□□□□ 0.56
TARDBP-220ENST00000618606 PLPPR3Q6T4P5 718 aa18.53■□□□□ 0.56
TARDBP-220ENST00000618606 PIAS4Q8N2W9 510 aaPredicted RBP18.4■□□□□ 0.54
TARDBP-220ENST00000618606 PPP6R1Q9UPN7 881 aa18.3■□□□□ 0.52
TARDBP-220ENST00000618606 ADRA2BP18089 450 aa18.21■□□□□ 0.51
TARDBP-220ENST00000618606 MAPK8IP2Q13387 824 aaPredicted RBP16.79■□□□□ 0.28
TARDBP-220ENST00000618606 DMRT2Q9Y5R5 561 aa16.78■□□□□ 0.28
TARDBP-220ENST00000618606 SCAF1Q9H7N4 1312 aaKnown RBP16.7■□□□□ 0.26
TARDBP-220ENST00000618606 PPP4R3CPQ6ZMV5 832 aa16.2■□□□□ 0.18
TARDBP-220ENST00000618606 HOXD11P31277 338 aaPredicted RBP16.09■□□□□ 0.17
TARDBP-220ENST00000618606 CACNB1Q02641 598 aaPredicted RBP16.09■□□□□ 0.17
TARDBP-220ENST00000618606 DCAF8L1A6NGE4 600 aa16.04■□□□□ 0.16
TARDBP-220ENST00000618606 CNKSR2Q8WXI2 1034 aa15.96■□□□□ 0.15
TARDBP-220ENST00000618606 RNF216Q9NWF9 866 aaPredicted RBP15.89■□□□□ 0.13
TARDBP-220ENST00000618606 RNF39Q9H2S5 420 aa15.86■□□□□ 0.13
TARDBP-220ENST00000618606 C1QBPQ07021 282 aaKnown RBP15.64■□□□□ 0.09
TARDBP-220ENST00000618606 DNAJC5BQ9UF47 199 aa15.63■□□□□ 0.09
TARDBP-220ENST00000618606 NCBP3Q53F19 620 aaKnown RBP15.52■□□□□ 0.08
TARDBP-220ENST00000618606 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.28■□□□□ 0.042e-9■■□□□ 12.1
TARDBP-220ENST00000618606 NPM3O75607 178 aaKnown RBP15.27■□□□□ 0.04
TARDBP-220ENST00000618606 U3KPZ7 1027 aaPredicted RBP14.94□□□□□ -0.02
TARDBP-220ENST00000618606 SPINK5Q9NQ38 1064 aaPredicted RBP14.78□□□□□ -0.04
TARDBP-220ENST00000618606 DSG3P32926 999 aa14.77□□□□□ -0.05
TARDBP-220ENST00000618606 CAPN15O75808 1086 aa14.76□□□□□ -0.05
TARDBP-220ENST00000618606 KCNA4P22459 653 aa14.75□□□□□ -0.05
TARDBP-220ENST00000618606 SLC4A2P04920 1241 aa14.66□□□□□ -0.06
TARDBP-220ENST00000618606 APLP2Q06481 763 aa14.53□□□□□ -0.08
TARDBP-220ENST00000618606 POTEHQ6S545 545 aa14.5□□□□□ -0.09
TARDBP-220ENST00000618606 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.47□□□□□ -0.09
TARDBP-220ENST00000618606 HNRNPUL2Q1KMD3 747 aaKnown RBP14.47□□□□□ -0.09
TARDBP-220ENST00000618606 ZNF219Q9P2Y4 722 aaPredicted RBP14.47□□□□□ -0.09
TARDBP-220ENST00000618606 TRHP20396 242 aaPredicted RBP14.46□□□□□ -0.09
TARDBP-220ENST00000618606 ABCB7O75027 752 aa14.38□□□□□ -0.11
TARDBP-220ENST00000618606 SAMD1Q6SPF0 538 aaPredicted RBP14.36□□□□□ -0.11
TARDBP-220ENST00000618606 MYCNP04198 464 aaPredicted RBP14.14□□□□□ -0.15
TARDBP-220ENST00000618606 RBM42Q9BTD8 480 aaKnown RBP14.12□□□□□ -0.15
TARDBP-220ENST00000618606 POLA2Q14181 598 aa14.04□□□□□ -0.16
TARDBP-220ENST00000618606 CHRDL2Q6WN34 429 aa13.88□□□□□ -0.19
TARDBP-220ENST00000618606 SLC4A1APQ9BWU0 796 aaKnown RBP13.88□□□□□ -0.19
TARDBP-220ENST00000618606 FOXD4L1Q9NU39 408 aa13.87□□□□□ -0.19
TARDBP-220ENST00000618606 ATF5Q9Y2D1 282 aaPredicted RBP13.81□□□□□ -0.2
TARDBP-220ENST00000618606 ZBTB12Q9Y330 459 aaPredicted RBP13.76□□□□□ -0.21
TARDBP-220ENST00000618606 AKT1S1Q96B36 256 aa13.73□□□□□ -0.21
TARDBP-220ENST00000618606 REM2Q8IYK8 340 aaPredicted RBP13.59□□□□□ -0.23
TARDBP-220ENST00000618606 OSCARQ8IYS5 282 aa13.59□□□□□ -0.23
TARDBP-220ENST00000618606 ZBTB22O15209 634 aa13.56□□□□□ -0.24
TARDBP-220ENST00000618606 ATXN8OSP0DMR3 200 aa13.5□□□□□ -0.25
TARDBP-220ENST00000618606 PIP4P2Q8N4L2 257 aa13.49□□□□□ -0.25
TARDBP-220ENST00000618606 SP7Q8TDD2 431 aaPredicted RBP13.48□□□□□ -0.25
TARDBP-220ENST00000618606 PITPNM1O00562 1244 aa13.43□□□□□ -0.26
TARDBP-220ENST00000618606 FXR2P51116 673 aaKnown RBP eCLIP13.4□□□□□ -0.26
TARDBP-220ENST00000618606 SPDYE2BA6NHP3 402 aa13.32□□□□□ -0.28
TARDBP-220ENST00000618606 SPDYE6P0CI01 402 aa13.32□□□□□ -0.28
TARDBP-220ENST00000618606 SPDYE2Q495Y8 402 aa13.32□□□□□ -0.28
TARDBP-220ENST00000618606 FBLN2P98095 1184 aa13.31□□□□□ -0.28
TARDBP-220ENST00000618606 HAX1O00165 279 aa13.3□□□□□ -0.28
TARDBP-220ENST00000618606 MKRN4PQ13434 485 aaPredicted RBP13.17□□□□□ -0.3
TARDBP-220ENST00000618606 SPDYE1Q8NFV5 336 aaPredicted RBP13.14□□□□□ -0.31
TARDBP-220ENST00000618606 EVX2Q03828 476 aa13.12□□□□□ -0.31
TARDBP-220ENST00000618606 SSUH2Q9Y2M2 353 aa13.11□□□□□ -0.31
TARDBP-220ENST00000618606 ZNF692Q9BU19 519 aaPredicted RBP13.1□□□□□ -0.31
TARDBP-220ENST00000618606 PRKAR2AP13861 404 aaKnown RBP13.09□□□□□ -0.31
TARDBP-220ENST00000618606 CLEC11AQ9Y240 323 aa13.09□□□□□ -0.31
TARDBP-220ENST00000618606 C19orf67A6NJJ6 358 aa12.97□□□□□ -0.33
TARDBP-220ENST00000618606 PABPN1Q86U42 306 aaKnown RBP eCLIP12.89□□□□□ -0.35
TARDBP-220ENST00000618606 PRR29P0C7W0 189 aa12.87□□□□□ -0.35
TARDBP-220ENST00000618606 CHADLQ6NUI6 762 aa12.86□□□□□ -0.35
TARDBP-220ENST00000618606 GABBR2O75899 941 aa12.83□□□□□ -0.36
TARDBP-220ENST00000618606 CSRNP3Q8WYN3 585 aa12.73□□□□□ -0.37
TARDBP-220ENST00000618606 FARP1Q9Y4F1 1045 aaPredicted RBP12.69□□□□□ -0.38
TARDBP-220ENST00000618606 CD44P16070 742 aaKnown RBP12.65□□□□□ -0.38
TARDBP-220ENST00000618606 LHX8Q68G74 356 aa12.64□□□□□ -0.39
TARDBP-220ENST00000618606 CLCN6P51797 869 aa12.61□□□□□ -0.39
TARDBP-220ENST00000618606 POTEIP0CG38 1075 aa12.55□□□□□ -0.4
TARDBP-220ENST00000618606 STAG3Q9UJ98 1225 aa12.52□□□□□ -0.41
TARDBP-220ENST00000618606 CREBZFQ9NS37 354 aa12.49□□□□□ -0.41
TARDBP-220ENST00000618606 ZNF579Q8NAF0 562 aaKnown RBP12.47□□□□□ -0.41
TARDBP-220ENST00000618606 ZRANB1Q9UGI0 708 aa12.44□□□□□ -0.42
TARDBP-220ENST00000618606 SPDYE4A6NLX3 237 aa12.43□□□□□ -0.42
TARDBP-220ENST00000618606 DCBLD2Q96PD2 775 aa12.42□□□□□ -0.42
TARDBP-220ENST00000618606 EHMT2Q96KQ7 1210 aa12.37□□□□□ -0.43
TARDBP-220ENST00000618606 GALR2O43603 387 aaPredicted RBP12.31□□□□□ -0.44
TARDBP-220ENST00000618606 PAK3O75914 559 aaPredicted RBP12.29□□□□□ -0.44
TARDBP-220ENST00000618606 NPM1P06748 294 aaKnown RBP eCLIP12.26□□□□□ -0.45
TARDBP-220ENST00000618606 MNX1P50219 401 aaPredicted RBP12.26□□□□□ -0.45
TARDBP-220ENST00000618606 PHF12Q96QT6 1004 aa12.22□□□□□ -0.45
TARDBP-220ENST00000618606 PROM2Q8N271 834 aa12.13□□□□□ -0.47
TARDBP-220ENST00000618606 OTUD5Q96G74 571 aa12.13□□□□□ -0.47
TARDBP-220ENST00000618606 POTEB2H3BUK9 544 aa12.12□□□□□ -0.47
TARDBP-220ENST00000618606 PELP1Q8IZL8 1130 aaKnown RBP12.1□□□□□ -0.47
TARDBP-220ENST00000618606 ASTLQ6HA08 431 aaPredicted RBP12.07□□□□□ -0.48
TARDBP-220ENST00000618606 MS4A3Q96HJ5 214 aa12.07□□□□□ -0.48
TARDBP-220ENST00000618606 ATMINO43313 823 aaPredicted RBP12.02□□□□□ -0.49
TARDBP-220ENST00000618606 C7P10643 843 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms