RNA–Protein interactions for RNA: ENST00000606706.5

LINC00458-205, long intergenic non-protein coding RNA 458, humanhuman

TSL 2

Gene LINC00458, Length 833 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00458-205ENST00000606706 AEBP2Q6ZN18 517 aaPredicted RBP32.99■■■□□ 2.87
LINC00458-205ENST00000606706 CHIC1Q5VXU3 224 aa31.08■■■□□ 2.57
LINC00458-205ENST00000606706 SENP3Q9H4L4 574 aaPredicted RBP28.1■■■□□ 2.09
LINC00458-205ENST00000606706 PHF23Q9BUL5 403 aaPredicted RBP27.74■■■□□ 2.03
LINC00458-205ENST00000606706 FOXD1Q16676 465 aa26.27■■□□□ 1.8
LINC00458-205ENST00000606706 PLPPR3Q6T4P5 718 aa24.71■■□□□ 1.55
LINC00458-205ENST00000606706 MSH5O43196 834 aa24.61■■□□□ 1.53
LINC00458-205ENST00000606706 PIAS4Q8N2W9 510 aaPredicted RBP24.48■■□□□ 1.51
LINC00458-205ENST00000606706 POTEDQ86YR6 584 aa24.43■■□□□ 1.5
LINC00458-205ENST00000606706 PPP6R1Q9UPN7 881 aa24.43■■□□□ 1.5
LINC00458-205ENST00000606706 ADRA2BP18089 450 aa24.33■■□□□ 1.49
LINC00458-205ENST00000606706 MAPK8IP2Q13387 824 aaPredicted RBP22.42■■□□□ 1.18
LINC00458-205ENST00000606706 DMRT2Q9Y5R5 561 aa22.27■■□□□ 1.16
LINC00458-205ENST00000606706 SCAF1Q9H7N4 1312 aaKnown RBP22.18■■□□□ 1.14
LINC00458-205ENST00000606706 PPP4R3CPQ6ZMV5 832 aa21.67■■□□□ 1.06
LINC00458-205ENST00000606706 DCAF8L1A6NGE4 600 aa21.39■■□□□ 1.01
LINC00458-205ENST00000606706 HOXD11P31277 338 aaPredicted RBP21.37■■□□□ 1.01
LINC00458-205ENST00000606706 CACNB1Q02641 598 aaPredicted RBP21.28■■□□□ 1
LINC00458-205ENST00000606706 CNKSR2Q8WXI2 1034 aa21.28■■□□□ 1
LINC00458-205ENST00000606706 RNF216Q9NWF9 866 aaPredicted RBP21.14■□□□□ 0.97
LINC00458-205ENST00000606706 RNF39Q9H2S5 420 aa21.01■□□□□ 0.95
LINC00458-205ENST00000606706 NCBP3Q53F19 620 aaKnown RBP20.73■□□□□ 0.91
LINC00458-205ENST00000606706 C1QBPQ07021 282 aaKnown RBP20.66■□□□□ 0.9
LINC00458-205ENST00000606706 DNAJC5BQ9UF47 199 aa20.62■□□□□ 0.89
LINC00458-205ENST00000606706 NPM3O75607 178 aaKnown RBP20.48■□□□□ 0.87
LINC00458-205ENST00000606706 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.36■□□□□ 0.85
LINC00458-205ENST00000606706 U3KPZ7 1027 aaPredicted RBP19.94■□□□□ 0.78
LINC00458-205ENST00000606706 KCNA4P22459 653 aa19.92■□□□□ 0.78
LINC00458-205ENST00000606706 SPINK5Q9NQ38 1064 aaPredicted RBP19.73■□□□□ 0.75
LINC00458-205ENST00000606706 CAPN15O75808 1086 aa19.67■□□□□ 0.74
LINC00458-205ENST00000606706 SLC4A2P04920 1241 aa19.63■□□□□ 0.73
LINC00458-205ENST00000606706 DSG3P32926 999 aa19.61■□□□□ 0.73
LINC00458-205ENST00000606706 TRHP20396 242 aaPredicted RBP19.32■□□□□ 0.68
LINC00458-205ENST00000606706 APLP2Q06481 763 aa19.27■□□□□ 0.68
LINC00458-205ENST00000606706 ABCB7O75027 752 aa19.24■□□□□ 0.67
LINC00458-205ENST00000606706 ZNF219Q9P2Y4 722 aaPredicted RBP19.23■□□□□ 0.67
LINC00458-205ENST00000606706 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.21■□□□□ 0.67
LINC00458-205ENST00000606706 HNRNPUL2Q1KMD3 747 aaKnown RBP19.21■□□□□ 0.67
LINC00458-205ENST00000606706 SAMD1Q6SPF0 538 aaPredicted RBP19.11■□□□□ 0.65
LINC00458-205ENST00000606706 POTEHQ6S545 545 aa19.09■□□□□ 0.65
LINC00458-205ENST00000606706 MYCNP04198 464 aaPredicted RBP18.91■□□□□ 0.62
LINC00458-205ENST00000606706 POLA2Q14181 598 aa18.75■□□□□ 0.59
LINC00458-205ENST00000606706 SLC4A1APQ9BWU0 796 aaKnown RBP18.73■□□□□ 0.59
LINC00458-205ENST00000606706 RBM42Q9BTD8 480 aaKnown RBP18.67■□□□□ 0.58
LINC00458-205ENST00000606706 FOXD4L1Q9NU39 408 aa18.62■□□□□ 0.57
LINC00458-205ENST00000606706 ATF5Q9Y2D1 282 aaPredicted RBP18.56■□□□□ 0.56
LINC00458-205ENST00000606706 CHRDL2Q6WN34 429 aa18.38■□□□□ 0.53
LINC00458-205ENST00000606706 ZBTB22O15209 634 aa18.33■□□□□ 0.52
LINC00458-205ENST00000606706 ZBTB12Q9Y330 459 aaPredicted RBP18.28■□□□□ 0.52
LINC00458-205ENST00000606706 AKT1S1Q96B36 256 aa18.21■□□□□ 0.51
LINC00458-205ENST00000606706 OSCARQ8IYS5 282 aa18.17■□□□□ 0.5
LINC00458-205ENST00000606706 REM2Q8IYK8 340 aaPredicted RBP18.07■□□□□ 0.48
LINC00458-205ENST00000606706 ATXN8OSP0DMR3 200 aa18.03■□□□□ 0.48
LINC00458-205ENST00000606706 PIP4P2Q8N4L2 257 aa17.92■□□□□ 0.46
LINC00458-205ENST00000606706 PITPNM1O00562 1244 aa17.89■□□□□ 0.45
LINC00458-205ENST00000606706 SP7Q8TDD2 431 aaPredicted RBP17.79■□□□□ 0.44
LINC00458-205ENST00000606706 FBLN2P98095 1184 aa17.77■□□□□ 0.44
LINC00458-205ENST00000606706 FXR2P51116 673 aaKnown RBP eCLIP17.76■□□□□ 0.43
LINC00458-205ENST00000606706 SPDYE2BA6NHP3 402 aa17.73■□□□□ 0.43
LINC00458-205ENST00000606706 SPDYE6P0CI01 402 aa17.73■□□□□ 0.43
LINC00458-205ENST00000606706 SPDYE2Q495Y8 402 aa17.73■□□□□ 0.43
LINC00458-205ENST00000606706 MKRN4PQ13434 485 aaPredicted RBP17.68■□□□□ 0.42
LINC00458-205ENST00000606706 HAX1O00165 279 aa17.64■□□□□ 0.41
LINC00458-205ENST00000606706 ZNF692Q9BU19 519 aaPredicted RBP17.5■□□□□ 0.39
LINC00458-205ENST00000606706 CLEC11AQ9Y240 323 aa17.49■□□□□ 0.39
LINC00458-205ENST00000606706 SSUH2Q9Y2M2 353 aa17.49■□□□□ 0.39
LINC00458-205ENST00000606706 SPDYE1Q8NFV5 336 aaPredicted RBP17.47■□□□□ 0.39
LINC00458-205ENST00000606706 EVX2Q03828 476 aa17.45■□□□□ 0.38
LINC00458-205ENST00000606706 PRKAR2AP13861 404 aaKnown RBP17.42■□□□□ 0.38
LINC00458-205ENST00000606706 CSRNP3Q8WYN3 585 aa17.27■□□□□ 0.36
LINC00458-205ENST00000606706 PABPN1Q86U42 306 aaKnown RBP eCLIP17.26■□□□□ 0.35
LINC00458-205ENST00000606706 CHADLQ6NUI6 762 aa17.22■□□□□ 0.35
LINC00458-205ENST00000606706 C19orf67A6NJJ6 358 aa17.21■□□□□ 0.35
LINC00458-205ENST00000606706 PRR29P0C7W0 189 aa17.15■□□□□ 0.34
LINC00458-205ENST00000606706 GABBR2O75899 941 aa17.01■□□□□ 0.31
LINC00458-205ENST00000606706 EHMT2Q96KQ7 1210 aa16.94■□□□□ 0.3
LINC00458-205ENST00000606706 FARP1Q9Y4F1 1045 aaPredicted RBP16.9■□□□□ 0.3
LINC00458-205ENST00000606706 CD44P16070 742 aaKnown RBP16.85■□□□□ 0.29
LINC00458-205ENST00000606706 SPDYE4A6NLX3 237 aa16.71■□□□□ 0.27
LINC00458-205ENST00000606706 CREBZFQ9NS37 354 aa16.71■□□□□ 0.27
LINC00458-205ENST00000606706 LHX8Q68G74 356 aa16.69■□□□□ 0.26
LINC00458-205ENST00000606706 POTEIP0CG38 1075 aa16.68■□□□□ 0.26
LINC00458-205ENST00000606706 STAG3Q9UJ98 1225 aa16.68■□□□□ 0.26
LINC00458-205ENST00000606706 ZRANB1Q9UGI0 708 aa16.59■□□□□ 0.25
LINC00458-205ENST00000606706 CLCN6P51797 869 aa16.58■□□□□ 0.24
LINC00458-205ENST00000606706 ZNF579Q8NAF0 562 aaKnown RBP16.57■□□□□ 0.24
LINC00458-205ENST00000606706 DCBLD2Q96PD2 775 aa16.49■□□□□ 0.23
LINC00458-205ENST00000606706 GALR2O43603 387 aaPredicted RBP16.41■□□□□ 0.22
LINC00458-205ENST00000606706 MNX1P50219 401 aaPredicted RBP16.39■□□□□ 0.21
LINC00458-205ENST00000606706 PHF12Q96QT6 1004 aa16.37■□□□□ 0.21
LINC00458-205ENST00000606706 PAK3O75914 559 aaPredicted RBP16.36■□□□□ 0.21
LINC00458-205ENST00000606706 NPM1P06748 294 aaKnown RBP eCLIP16.34■□□□□ 0.21
LINC00458-205ENST00000606706 PROM2Q8N271 834 aa16.26■□□□□ 0.19
LINC00458-205ENST00000606706 POTEB2H3BUK9 544 aa16.13■□□□□ 0.17
LINC00458-205ENST00000606706 PELP1Q8IZL8 1130 aaKnown RBP16.13■□□□□ 0.17
LINC00458-205ENST00000606706 MS4A3Q96HJ5 214 aa16.13■□□□□ 0.17
LINC00458-205ENST00000606706 OTUD5Q96G74 571 aa16.09■□□□□ 0.17
LINC00458-205ENST00000606706 TSPYL2Q9H2G4 693 aaPredicted RBP16.09■□□□□ 0.17
LINC00458-205ENST00000606706 ASTLQ6HA08 431 aaPredicted RBP16.03■□□□□ 0.16
LINC00458-205ENST00000606706 ATMINO43313 823 aaPredicted RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms