RNA–Protein interactions for RNA: ENST00000599264.1

LINC00343-208, long intergenic non-protein coding RNA 343, humanhuman

TSL 3

Gene LINC00343, Length 807 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00343-208ENST00000599264 AEBP2Q6ZN18 517 aaPredicted RBP36.18■■■■□ 3.38
LINC00343-208ENST00000599264 CHIC1Q5VXU3 224 aa35■■■■□ 3.19
LINC00343-208ENST00000599264 SENP3Q9H4L4 574 aaPredicted RBP30.95■■■□□ 2.55
LINC00343-208ENST00000599264 PHF23Q9BUL5 403 aaPredicted RBP30.64■■■□□ 2.5
LINC00343-208ENST00000599264 FOXD1Q16676 465 aa28.67■■■□□ 2.18
LINC00343-208ENST00000599264 PLPPR3Q6T4P5 718 aa28.29■■■□□ 2.12
LINC00343-208ENST00000599264 PPP6R1Q9UPN7 881 aa27.18■■□□□ 1.94
LINC00343-208ENST00000599264 ADRA2BP18089 450 aa27.17■■□□□ 1.94
LINC00343-208ENST00000599264 PIAS4Q8N2W9 510 aaPredicted RBP27■■□□□ 1.91
LINC00343-208ENST00000599264 MSH5O43196 834 aa26.76■■□□□ 1.87
LINC00343-208ENST00000599264 SCAF1Q9H7N4 1312 aaKnown RBP25.06■■□□□ 1.6
LINC00343-208ENST00000599264 POTEDQ86YR6 584 aa25.05■■□□□ 1.6
LINC00343-208ENST00000599264 PPP4R3CPQ6ZMV5 832 aa24.82■■□□□ 1.56
LINC00343-208ENST00000599264 MAPK8IP2Q13387 824 aaPredicted RBP24.76■■□□□ 1.55
LINC00343-208ENST00000599264 DMRT2Q9Y5R5 561 aa24.58■■□□□ 1.53
LINC00343-208ENST00000599264 CNKSR2Q8WXI2 1034 aa24.27■■□□□ 1.48
LINC00343-208ENST00000599264 NCBP3Q53F19 620 aaKnown RBP24.16■■□□□ 1.46
LINC00343-208ENST00000599264 RNF216Q9NWF9 866 aaPredicted RBP23.9■■□□□ 1.42
LINC00343-208ENST00000599264 HOXD11P31277 338 aaPredicted RBP23.89■■□□□ 1.41
LINC00343-208ENST00000599264 KCNA4P22459 653 aa23.67■■□□□ 1.38
LINC00343-208ENST00000599264 NPM3O75607 178 aaKnown RBP23.65■■□□□ 1.38
LINC00343-208ENST00000599264 DCAF8L1A6NGE4 600 aa23.61■■□□□ 1.37
LINC00343-208ENST00000599264 DNAJC5BQ9UF47 199 aa23.07■■□□□ 1.28
LINC00343-208ENST00000599264 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.85■■□□□ 1.25
LINC00343-208ENST00000599264 RNF39Q9H2S5 420 aa22.79■■□□□ 1.24
LINC00343-208ENST00000599264 CACNB1Q02641 598 aaPredicted RBP22.61■■□□□ 1.21
LINC00343-208ENST00000599264 C1QBPQ07021 282 aaKnown RBP22.58■■□□□ 1.21
LINC00343-208ENST00000599264 SLC4A1APQ9BWU0 796 aaKnown RBP22.54■■□□□ 1.2
LINC00343-208ENST00000599264 SLC4A2P04920 1241 aa22.4■■□□□ 1.18
LINC00343-208ENST00000599264 U3KPZ7 1027 aaPredicted RBP22.31■■□□□ 1.16
LINC00343-208ENST00000599264 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.07■■□□□ 1.12
LINC00343-208ENST00000599264 HNRNPUL2Q1KMD3 747 aaKnown RBP22.07■■□□□ 1.12
LINC00343-208ENST00000599264 FOXD4L1Q9NU39 408 aa22■■□□□ 1.11
LINC00343-208ENST00000599264 APLP2Q06481 763 aa21.98■■□□□ 1.11
LINC00343-208ENST00000599264 MYCNP04198 464 aaPredicted RBP21.95■■□□□ 1.1
LINC00343-208ENST00000599264 SAMD1Q6SPF0 538 aaPredicted RBP21.92■■□□□ 1.1
LINC00343-208ENST00000599264 CAPN15O75808 1086 aa21.85■■□□□ 1.09
LINC00343-208ENST00000599264 SPINK5Q9NQ38 1064 aaPredicted RBP21.81■■□□□ 1.08
LINC00343-208ENST00000599264 ZBTB22O15209 634 aa21.7■■□□□ 1.06
LINC00343-208ENST00000599264 ZNF219Q9P2Y4 722 aaPredicted RBP21.66■■□□□ 1.06
LINC00343-208ENST00000599264 TRHP20396 242 aaPredicted RBP21.62■■□□□ 1.05
LINC00343-208ENST00000599264 DSG3P32926 999 aa21.53■■□□□ 1.04
LINC00343-208ENST00000599264 ABCB7O75027 752 aa21.33■■□□□ 1.01
LINC00343-208ENST00000599264 EHMT2Q96KQ7 1210 aa21.33■■□□□ 1.01
LINC00343-208ENST00000599264 ATXN8OSP0DMR3 200 aa21.32■■□□□ 1
LINC00343-208ENST00000599264 CSRNP3Q8WYN3 585 aa21.26■□□□□ 0.99
LINC00343-208ENST00000599264 ATF5Q9Y2D1 282 aaPredicted RBP21.24■□□□□ 0.99
LINC00343-208ENST00000599264 POLA2Q14181 598 aa21.15■□□□□ 0.98
LINC00343-208ENST00000599264 ZBTB12Q9Y330 459 aaPredicted RBP20.89■□□□□ 0.93
LINC00343-208ENST00000599264 RBM42Q9BTD8 480 aaKnown RBP20.66■□□□□ 0.9
LINC00343-208ENST00000599264 FBLN2P98095 1184 aa20.6■□□□□ 0.89
LINC00343-208ENST00000599264 OSCARQ8IYS5 282 aa20.42■□□□□ 0.86
LINC00343-208ENST00000599264 MKRN4PQ13434 485 aaPredicted RBP20.31■□□□□ 0.84
LINC00343-208ENST00000599264 AKT1S1Q96B36 256 aa20.26■□□□□ 0.83
LINC00343-208ENST00000599264 SPDYE2BA6NHP3 402 aa20.23■□□□□ 0.83
LINC00343-208ENST00000599264 SPDYE6P0CI01 402 aa20.23■□□□□ 0.83
LINC00343-208ENST00000599264 SPDYE2Q495Y8 402 aa20.23■□□□□ 0.83
LINC00343-208ENST00000599264 ZNF692Q9BU19 519 aaPredicted RBP20.07■□□□□ 0.8
LINC00343-208ENST00000599264 REM2Q8IYK8 340 aaPredicted RBP20.01■□□□□ 0.79
LINC00343-208ENST00000599264 SSUH2Q9Y2M2 353 aa19.95■□□□□ 0.78
LINC00343-208ENST00000599264 CHRDL2Q6WN34 429 aa19.9■□□□□ 0.78
LINC00343-208ENST00000599264 POTEHQ6S545 545 aa19.79■□□□□ 0.76
LINC00343-208ENST00000599264 SPDYE4A6NLX3 237 aa19.76■□□□□ 0.75
LINC00343-208ENST00000599264 PITPNM1O00562 1244 aa19.76■□□□□ 0.75
LINC00343-208ENST00000599264 PABPN1Q86U42 306 aaKnown RBP eCLIP19.76■□□□□ 0.75
LINC00343-208ENST00000599264 SPDYE1Q8NFV5 336 aaPredicted RBP19.76■□□□□ 0.75
LINC00343-208ENST00000599264 CLEC11AQ9Y240 323 aa19.67■□□□□ 0.74
LINC00343-208ENST00000599264 PIP4P2Q8N4L2 257 aa19.51■□□□□ 0.71
LINC00343-208ENST00000599264 FXR2P51116 673 aaKnown RBP eCLIP19.49■□□□□ 0.71
LINC00343-208ENST00000599264 PRR29P0C7W0 189 aa19.45■□□□□ 0.7
LINC00343-208ENST00000599264 STAG3Q9UJ98 1225 aa19.44■□□□□ 0.7
LINC00343-208ENST00000599264 FKBP8Q14318 412 aa19.32■□□□□ 0.68
LINC00343-208ENST00000599264 PRKAR2AP13861 404 aaKnown RBP19.3■□□□□ 0.68
LINC00343-208ENST00000599264 PROM2Q8N271 834 aa19.29■□□□□ 0.68
LINC00343-208ENST00000599264 CHADLQ6NUI6 762 aa19.14■□□□□ 0.65
LINC00343-208ENST00000599264 HAX1O00165 279 aa19.08■□□□□ 0.64
LINC00343-208ENST00000599264 CREBZFQ9NS37 354 aa18.99■□□□□ 0.63
LINC00343-208ENST00000599264 FARP1Q9Y4F1 1045 aaPredicted RBP18.98■□□□□ 0.63
LINC00343-208ENST00000599264 PLEKHG5O94827 1062 aa18.89■□□□□ 0.61
LINC00343-208ENST00000599264 FBXO3Q9UK99 471 aa18.88■□□□□ 0.61
LINC00343-208ENST00000599264 C19orf67A6NJJ6 358 aa18.85■□□□□ 0.61
LINC00343-208ENST00000599264 MIER1Q8N108 512 aa18.82■□□□□ 0.6
LINC00343-208ENST00000599264 SP7Q8TDD2 431 aaPredicted RBP18.82■□□□□ 0.6
LINC00343-208ENST00000599264 NPM1P06748 294 aaKnown RBP eCLIP18.81■□□□□ 0.6
LINC00343-208ENST00000599264 PLCD3Q8N3E9 789 aa18.76■□□□□ 0.59
LINC00343-208ENST00000599264 CD44P16070 742 aaKnown RBP18.73■□□□□ 0.59
LINC00343-208ENST00000599264 EVX2Q03828 476 aa18.72■□□□□ 0.59
LINC00343-208ENST00000599264 MNX1P50219 401 aaPredicted RBP18.69■□□□□ 0.58
LINC00343-208ENST00000599264 ZBTB47Q9UFB7 747 aaPredicted RBP18.65■□□□□ 0.58
LINC00343-208ENST00000599264 PAK3O75914 559 aaPredicted RBP18.64■□□□□ 0.57
LINC00343-208ENST00000599264 ZRANB1Q9UGI0 708 aa18.56■□□□□ 0.56
LINC00343-208ENST00000599264 VASPP50552 380 aaPredicted RBP18.52■□□□□ 0.56
LINC00343-208ENST00000599264 CLCN6P51797 869 aa18.5■□□□□ 0.55
LINC00343-208ENST00000599264 ZNF579Q8NAF0 562 aaKnown RBP18.46■□□□□ 0.55
LINC00343-208ENST00000599264 GABBR2O75899 941 aa18.43■□□□□ 0.54
LINC00343-208ENST00000599264 TSPYL2Q9H2G4 693 aaPredicted RBP18.4■□□□□ 0.54
LINC00343-208ENST00000599264 KLHL34Q8N239 644 aa18.39■□□□□ 0.53
LINC00343-208ENST00000599264 RASEFQ8IZ41 740 aa18.32■□□□□ 0.52
LINC00343-208ENST00000599264 NUBP1P53384 320 aa18.3■□□□□ 0.52
LINC00343-208ENST00000599264 PHF12Q96QT6 1004 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms