RNA–Protein interactions for RNA: ENST00000591955.1

NPC1-213, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

TSL 4

Gene NPC1, Length 561 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-213ENST00000591955 AEBP2Q6ZN18 517 aaPredicted RBP24.82■■□□□ 1.56
NPC1-213ENST00000591955 CHIC1Q5VXU3 224 aa23.23■■□□□ 1.31
NPC1-213ENST00000591955 SENP3Q9H4L4 574 aaPredicted RBP21.2■□□□□ 0.98
NPC1-213ENST00000591955 PHF23Q9BUL5 403 aaPredicted RBP20.88■□□□□ 0.93
NPC1-213ENST00000591955 FOXD1Q16676 465 aa19.81■□□□□ 0.76
NPC1-213ENST00000591955 POTEDQ86YR6 584 aa18.79■□□□□ 0.6
NPC1-213ENST00000591955 MSH5O43196 834 aa18.66■□□□□ 0.58
NPC1-213ENST00000591955 PLPPR3Q6T4P5 718 aa18.4■□□□□ 0.54
NPC1-213ENST00000591955 PIAS4Q8N2W9 510 aaPredicted RBP18.4■□□□□ 0.54
NPC1-213ENST00000591955 PPP6R1Q9UPN7 881 aa18.27■□□□□ 0.52
NPC1-213ENST00000591955 ADRA2BP18089 450 aa18.17■□□□□ 0.5
NPC1-213ENST00000591955 MAPK8IP2Q13387 824 aaPredicted RBP16.8■□□□□ 0.28
NPC1-213ENST00000591955 DMRT2Q9Y5R5 561 aa16.77■□□□□ 0.28
NPC1-213ENST00000591955 SCAF1Q9H7N4 1312 aaKnown RBP16.62■□□□□ 0.25
NPC1-213ENST00000591955 CACNB1Q02641 598 aaPredicted RBP16.19■□□□□ 0.18
NPC1-213ENST00000591955 PPP4R3CPQ6ZMV5 832 aa16.08■□□□□ 0.16
NPC1-213ENST00000591955 HOXD11P31277 338 aaPredicted RBP16.04■□□□□ 0.16
NPC1-213ENST00000591955 DCAF8L1A6NGE4 600 aa16.03■□□□□ 0.16
NPC1-213ENST00000591955 RNF39Q9H2S5 420 aa15.91■□□□□ 0.14
NPC1-213ENST00000591955 CNKSR2Q8WXI2 1034 aa15.86■□□□□ 0.13
NPC1-213ENST00000591955 RNF216Q9NWF9 866 aaPredicted RBP15.82■□□□□ 0.12
NPC1-213ENST00000591955 C1QBPQ07021 282 aaKnown RBP15.64■□□□□ 0.09
NPC1-213ENST00000591955 DNAJC5BQ9UF47 199 aa15.58■□□□□ 0.08
NPC1-213ENST00000591955 NCBP3Q53F19 620 aaKnown RBP15.35■□□□□ 0.05
NPC1-213ENST00000591955 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.22■□□□□ 0.03
NPC1-213ENST00000591955 NPM3O75607 178 aaKnown RBP15.15■□□□□ 0.02
NPC1-213ENST00000591955 U3KPZ7 1027 aaPredicted RBP14.91□□□□□ -0.02
NPC1-213ENST00000591955 DSG3P32926 999 aa14.78□□□□□ -0.04
NPC1-213ENST00000591955 SPINK5Q9NQ38 1064 aaPredicted RBP14.78□□□□□ -0.04
NPC1-213ENST00000591955 CAPN15O75808 1086 aa14.74□□□□□ -0.05
NPC1-213ENST00000591955 POTEHQ6S545 545 aa14.65□□□□□ -0.06
NPC1-213ENST00000591955 SLC4A2P04920 1241 aa14.57□□□□□ -0.08
NPC1-213ENST00000591955 KCNA4P22459 653 aa14.55□□□□□ -0.08
NPC1-213ENST00000591955 APLP2Q06481 763 aa14.43□□□□□ -0.1
NPC1-213ENST00000591955 TRHP20396 242 aaPredicted RBP14.42□□□□□ -0.1
NPC1-213ENST00000591955 ZNF219Q9P2Y4 722 aaPredicted RBP14.41□□□□□ -0.1
NPC1-213ENST00000591955 ABCB7O75027 752 aa14.38□□□□□ -0.11
NPC1-213ENST00000591955 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.34□□□□□ -0.11
NPC1-213ENST00000591955 HNRNPUL2Q1KMD3 747 aaKnown RBP14.34□□□□□ -0.11
NPC1-213ENST00000591955 SAMD1Q6SPF0 538 aaPredicted RBP14.25□□□□□ -0.13
NPC1-213ENST00000591955 RBM42Q9BTD8 480 aaKnown RBP14.09□□□□□ -0.15
NPC1-213ENST00000591955 MYCNP04198 464 aaPredicted RBP14.01□□□□□ -0.17
NPC1-213ENST00000591955 POLA2Q14181 598 aa13.98□□□□□ -0.17
NPC1-213ENST00000591955 CHRDL2Q6WN34 429 aa13.91□□□□□ -0.18
NPC1-213ENST00000591955 ATF5Q9Y2D1 282 aaPredicted RBP13.73□□□□□ -0.21
NPC1-213ENST00000591955 AKT1S1Q96B36 256 aa13.71□□□□□ -0.21
NPC1-213ENST00000591955 FOXD4L1Q9NU39 408 aa13.68□□□□□ -0.22
NPC1-213ENST00000591955 ZBTB12Q9Y330 459 aaPredicted RBP13.67□□□□□ -0.22
NPC1-213ENST00000591955 SLC4A1APQ9BWU0 796 aaKnown RBP13.65□□□□□ -0.22
NPC1-213ENST00000591955 REM2Q8IYK8 340 aaPredicted RBP13.58□□□□□ -0.24
NPC1-213ENST00000591955 SP7Q8TDD2 431 aaPredicted RBP13.58□□□□□ -0.24
NPC1-213ENST00000591955 OSCARQ8IYS5 282 aa13.55□□□□□ -0.24
NPC1-213ENST00000591955 PIP4P2Q8N4L2 257 aa13.53□□□□□ -0.24
NPC1-213ENST00000591955 PITPNM1O00562 1244 aa13.44□□□□□ -0.26
NPC1-213ENST00000591955 FXR2P51116 673 aaKnown RBP eCLIP13.41□□□□□ -0.26
NPC1-213ENST00000591955 ZBTB22O15209 634 aa13.39□□□□□ -0.27
NPC1-213ENST00000591955 HAX1O00165 279 aa13.34□□□□□ -0.27
NPC1-213ENST00000591955 ATXN8OSP0DMR3 200 aa13.32□□□□□ -0.28
NPC1-213ENST00000591955 SPDYE2BA6NHP3 402 aa13.24□□□□□ -0.29
NPC1-213ENST00000591955 SPDYE6P0CI01 402 aa13.24□□□□□ -0.29
NPC1-213ENST00000591955 SPDYE2Q495Y8 402 aa13.24□□□□□ -0.29
NPC1-213ENST00000591955 FBLN2P98095 1184 aa13.18□□□□□ -0.3
NPC1-213ENST00000591955 EVX2Q03828 476 aa13.18□□□□□ -0.3
NPC1-213ENST00000591955 MKRN4PQ13434 485 aaPredicted RBP13.08□□□□□ -0.32
NPC1-213ENST00000591955 PRKAR2AP13861 404 aaKnown RBP13.07□□□□□ -0.32
NPC1-213ENST00000591955 SPDYE1Q8NFV5 336 aaPredicted RBP13.07□□□□□ -0.32
NPC1-213ENST00000591955 CLEC11AQ9Y240 323 aa13.04□□□□□ -0.32
NPC1-213ENST00000591955 SSUH2Q9Y2M2 353 aa13.04□□□□□ -0.32
NPC1-213ENST00000591955 ZNF692Q9BU19 519 aaPredicted RBP13□□□□□ -0.33
NPC1-213ENST00000591955 C19orf67A6NJJ6 358 aa12.99□□□□□ -0.33
NPC1-213ENST00000591955 GABBR2O75899 941 aa12.86□□□□□ -0.35
NPC1-213ENST00000591955 CHADLQ6NUI6 762 aa12.85□□□□□ -0.35
NPC1-213ENST00000591955 PABPN1Q86U42 306 aaKnown RBP eCLIP12.8□□□□□ -0.36
NPC1-213ENST00000591955 PRR29P0C7W0 189 aa12.79□□□□□ -0.36
NPC1-213ENST00000591955 LHX8Q68G74 356 aa12.72□□□□□ -0.37
NPC1-213ENST00000591955 FARP1Q9Y4F1 1045 aaPredicted RBP12.64□□□□□ -0.39
NPC1-213ENST00000591955 CD44P16070 742 aaKnown RBP12.63□□□□□ -0.39
NPC1-213ENST00000591955 POTEIP0CG38 1075 aa12.61□□□□□ -0.39
NPC1-213ENST00000591955 CLCN6P51797 869 aa12.56□□□□□ -0.4
NPC1-213ENST00000591955 CSRNP3Q8WYN3 585 aa12.46□□□□□ -0.41
NPC1-213ENST00000591955 ZNF579Q8NAF0 562 aaKnown RBP12.45□□□□□ -0.42
NPC1-213ENST00000591955 CREBZFQ9NS37 354 aa12.43□□□□□ -0.42
NPC1-213ENST00000591955 DCBLD2Q96PD2 775 aa12.41□□□□□ -0.42
NPC1-213ENST00000591955 ZRANB1Q9UGI0 708 aa12.39□□□□□ -0.43
NPC1-213ENST00000591955 STAG3Q9UJ98 1225 aa12.39□□□□□ -0.43
NPC1-213ENST00000591955 GALR2O43603 387 aaPredicted RBP12.3□□□□□ -0.44
NPC1-213ENST00000591955 SPDYE4A6NLX3 237 aa12.27□□□□□ -0.45
NPC1-213ENST00000591955 PAK3O75914 559 aaPredicted RBP12.21□□□□□ -0.45
NPC1-213ENST00000591955 OTUD5Q96G74 571 aa12.2□□□□□ -0.46
NPC1-213ENST00000591955 PHF12Q96QT6 1004 aa12.2□□□□□ -0.46
NPC1-213ENST00000591955 MNX1P50219 401 aaPredicted RBP12.19□□□□□ -0.46
NPC1-213ENST00000591955 POTEB2H3BUK9 544 aa12.18□□□□□ -0.46
NPC1-213ENST00000591955 NPM1P06748 294 aaKnown RBP eCLIP12.16□□□□□ -0.46
NPC1-213ENST00000591955 PLSCR2Q9NRY7 297 aa12.13□□□□□ -0.47
NPC1-213ENST00000591955 PELP1Q8IZL8 1130 aaKnown RBP12.11□□□□□ -0.47
NPC1-213ENST00000591955 EHMT2Q96KQ7 1210 aa12.07□□□□□ -0.48
NPC1-213ENST00000591955 ASTLQ6HA08 431 aaPredicted RBP12.05□□□□□ -0.48
NPC1-213ENST00000591955 MS4A3Q96HJ5 214 aa12.04□□□□□ -0.48
NPC1-213ENST00000591955 ATMINO43313 823 aaPredicted RBP12□□□□□ -0.49
NPC1-213ENST00000591955 METRNQ9UJH8 293 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms