RNA–Protein interactions for RNA: ENST00000590013.2

PIK3C3-212, Transcript of phosphatidylinositol 3-kinase catalytic subunit type 3, humanhuman

TSL 5

Gene PIK3C3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PIK3C3-212ENST00000590013 AEBP2Q6ZN18 517 aaPredicted RBP26.51■■□□□ 1.83
PIK3C3-212ENST00000590013 CHIC1Q5VXU3 224 aa25.3■■□□□ 1.64
PIK3C3-212ENST00000590013 SENP3Q9H4L4 574 aaPredicted RBP22.71■■□□□ 1.23
PIK3C3-212ENST00000590013 PHF23Q9BUL5 403 aaPredicted RBP22.36■■□□□ 1.17
PIK3C3-212ENST00000590013 FOXD1Q16676 465 aa21.08■□□□□ 0.97
PIK3C3-212ENST00000590013 PLPPR3Q6T4P5 718 aa20.26■□□□□ 0.83
PIK3C3-212ENST00000590013 MSH5O43196 834 aa19.81■□□□□ 0.76
PIK3C3-212ENST00000590013 PIAS4Q8N2W9 510 aaPredicted RBP19.72■□□□□ 0.75
PIK3C3-212ENST00000590013 PPP6R1Q9UPN7 881 aa19.71■□□□□ 0.75
PIK3C3-212ENST00000590013 ADRA2BP18089 450 aa19.64■□□□□ 0.73
PIK3C3-212ENST00000590013 POTEDQ86YR6 584 aa19.15■□□□□ 0.66
PIK3C3-212ENST00000590013 SCAF1Q9H7N4 1312 aaKnown RBP18.12■□□□□ 0.49
PIK3C3-212ENST00000590013 MAPK8IP2Q13387 824 aaPredicted RBP18■□□□□ 0.47
PIK3C3-212ENST00000590013 DMRT2Q9Y5R5 561 aa18■□□□□ 0.47
PIK3C3-212ENST00000590013 PPP4R3CPQ6ZMV5 832 aa17.72■□□□□ 0.43
PIK3C3-212ENST00000590013 CNKSR2Q8WXI2 1034 aa17.43■□□□□ 0.38
PIK3C3-212ENST00000590013 HOXD11P31277 338 aaPredicted RBP17.38■□□□□ 0.37
PIK3C3-212ENST00000590013 RNF216Q9NWF9 866 aaPredicted RBP17.27■□□□□ 0.36
PIK3C3-212ENST00000590013 DCAF8L1A6NGE4 600 aa17.14■□□□□ 0.33
PIK3C3-212ENST00000590013 NCBP3Q53F19 620 aaKnown RBP17.12■□□□□ 0.33
PIK3C3-212ENST00000590013 DNAJC5BQ9UF47 199 aa16.89■□□□□ 0.29
PIK3C3-212ENST00000590013 CACNB1Q02641 598 aaPredicted RBP16.88■□□□□ 0.29
PIK3C3-212ENST00000590013 RNF39Q9H2S5 420 aa16.87■□□□□ 0.29
PIK3C3-212ENST00000590013 NPM3O75607 178 aaKnown RBP16.79■□□□□ 0.28
PIK3C3-212ENST00000590013 C1QBPQ07021 282 aaKnown RBP16.67■□□□□ 0.26
PIK3C3-212ENST00000590013 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.49■□□□□ 0.23
PIK3C3-212ENST00000590013 KCNA4P22459 653 aa16.48■□□□□ 0.23
PIK3C3-212ENST00000590013 U3KPZ7 1027 aaPredicted RBP16.15■□□□□ 0.18
PIK3C3-212ENST00000590013 SLC4A2P04920 1241 aa16.02■□□□□ 0.16
PIK3C3-212ENST00000590013 SPINK5Q9NQ38 1064 aaPredicted RBP15.86■□□□□ 0.13
PIK3C3-212ENST00000590013 CAPN15O75808 1086 aa15.85■□□□□ 0.13
PIK3C3-212ENST00000590013 APLP2Q06481 763 aa15.84■□□□□ 0.13
PIK3C3-212ENST00000590013 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.82■□□□□ 0.12
PIK3C3-212ENST00000590013 HNRNPUL2Q1KMD3 747 aaKnown RBP15.82■□□□□ 0.12
PIK3C3-212ENST00000590013 DSG3P32926 999 aa15.79■□□□□ 0.12
PIK3C3-212ENST00000590013 SAMD1Q6SPF0 538 aaPredicted RBP15.7■□□□□ 0.1
PIK3C3-212ENST00000590013 ZNF219Q9P2Y4 722 aaPredicted RBP15.68■□□□□ 0.1
PIK3C3-212ENST00000590013 SLC4A1APQ9BWU0 796 aaKnown RBP15.6■□□□□ 0.09
PIK3C3-212ENST00000590013 MYCNP04198 464 aaPredicted RBP15.59■□□□□ 0.09
PIK3C3-212ENST00000590013 TRHP20396 242 aaPredicted RBP15.59■□□□□ 0.09
PIK3C3-212ENST00000590013 ABCB7O75027 752 aa15.44■□□□□ 0.06
PIK3C3-212ENST00000590013 FOXD4L1Q9NU39 408 aa15.43■□□□□ 0.06
PIK3C3-212ENST00000590013 POLA2Q14181 598 aa15.21■□□□□ 0.03
PIK3C3-212ENST00000590013 RBM42Q9BTD8 480 aaKnown RBP15.15■□□□□ 0.02
PIK3C3-212ENST00000590013 ZBTB22O15209 634 aa15.12■□□□□ 0.01
PIK3C3-212ENST00000590013 ATF5Q9Y2D1 282 aaPredicted RBP15.11■□□□□ 0.01
PIK3C3-212ENST00000590013 POTEHQ6S545 545 aa15.04■□□□□ -0
PIK3C3-212ENST00000590013 ATXN8OSP0DMR3 200 aa15.03■□□□□ -0
PIK3C3-212ENST00000590013 ZBTB12Q9Y330 459 aaPredicted RBP15.03■□□□□ -0
PIK3C3-212ENST00000590013 AKT1S1Q96B36 256 aa14.79□□□□□ -0.04
PIK3C3-212ENST00000590013 CHRDL2Q6WN34 429 aa14.72□□□□□ -0.05
PIK3C3-212ENST00000590013 OSCARQ8IYS5 282 aa14.7□□□□□ -0.06
PIK3C3-212ENST00000590013 EHMT2Q96KQ7 1210 aa14.66□□□□□ -0.06
PIK3C3-212ENST00000590013 FBLN2P98095 1184 aa14.63□□□□□ -0.07
PIK3C3-212ENST00000590013 REM2Q8IYK8 340 aaPredicted RBP14.59□□□□□ -0.07
PIK3C3-212ENST00000590013 SPDYE2BA6NHP3 402 aa14.54□□□□□ -0.08
PIK3C3-212ENST00000590013 SPDYE6P0CI01 402 aa14.54□□□□□ -0.08
PIK3C3-212ENST00000590013 SPDYE2Q495Y8 402 aa14.54□□□□□ -0.08
PIK3C3-212ENST00000590013 CSRNP3Q8WYN3 585 aa14.5□□□□□ -0.09
PIK3C3-212ENST00000590013 MKRN4PQ13434 485 aaPredicted RBP14.45□□□□□ -0.1
PIK3C3-212ENST00000590013 PITPNM1O00562 1244 aa14.41□□□□□ -0.1
PIK3C3-212ENST00000590013 PIP4P2Q8N4L2 257 aa14.36□□□□□ -0.11
PIK3C3-212ENST00000590013 FXR2P51116 673 aaKnown RBP eCLIP14.33□□□□□ -0.12
PIK3C3-212ENST00000590013 SSUH2Q9Y2M2 353 aa14.33□□□□□ -0.12
PIK3C3-212ENST00000590013 ZNF692Q9BU19 519 aaPredicted RBP14.3□□□□□ -0.12
PIK3C3-212ENST00000590013 SPDYE1Q8NFV5 336 aaPredicted RBP14.26□□□□□ -0.13
PIK3C3-212ENST00000590013 SP7Q8TDD2 431 aaPredicted RBP14.13□□□□□ -0.15
PIK3C3-212ENST00000590013 CLEC11AQ9Y240 323 aa14.13□□□□□ -0.15
PIK3C3-212ENST00000590013 HAX1O00165 279 aa14.08□□□□□ -0.16
PIK3C3-212ENST00000590013 PABPN1Q86U42 306 aaKnown RBP eCLIP14.08□□□□□ -0.16
PIK3C3-212ENST00000590013 PRKAR2AP13861 404 aaKnown RBP14.04□□□□□ -0.16
PIK3C3-212ENST00000590013 PRR29P0C7W0 189 aa13.96□□□□□ -0.17
PIK3C3-212ENST00000590013 C19orf67A6NJJ6 358 aa13.86□□□□□ -0.19
PIK3C3-212ENST00000590013 EVX2Q03828 476 aa13.85□□□□□ -0.19
PIK3C3-212ENST00000590013 CHADLQ6NUI6 762 aa13.83□□□□□ -0.2
PIK3C3-212ENST00000590013 SPDYE4A6NLX3 237 aa13.82□□□□□ -0.2
PIK3C3-212ENST00000590013 STAG3Q9UJ98 1225 aa13.81□□□□□ -0.2
PIK3C3-212ENST00000590013 FARP1Q9Y4F1 1045 aaPredicted RBP13.72□□□□□ -0.21
PIK3C3-212ENST00000590013 CREBZFQ9NS37 354 aa13.61□□□□□ -0.23
PIK3C3-212ENST00000590013 GABBR2O75899 941 aa13.6□□□□□ -0.23
PIK3C3-212ENST00000590013 CD44P16070 742 aaKnown RBP13.6□□□□□ -0.23
PIK3C3-212ENST00000590013 CLCN6P51797 869 aa13.6□□□□□ -0.23
PIK3C3-212ENST00000590013 PROM2Q8N271 834 aa13.57□□□□□ -0.24
PIK3C3-212ENST00000590013 ZNF579Q8NAF0 562 aaKnown RBP13.45□□□□□ -0.26
PIK3C3-212ENST00000590013 NPM1P06748 294 aaKnown RBP eCLIP13.43□□□□□ -0.26
PIK3C3-212ENST00000590013 ZRANB1Q9UGI0 708 aa13.41□□□□□ -0.26
PIK3C3-212ENST00000590013 MNX1P50219 401 aaPredicted RBP13.4□□□□□ -0.26
PIK3C3-212ENST00000590013 PAK3O75914 559 aaPredicted RBP13.37□□□□□ -0.27
PIK3C3-212ENST00000590013 POTEIP0CG38 1075 aa13.29□□□□□ -0.28
PIK3C3-212ENST00000590013 DCBLD2Q96PD2 775 aa13.27□□□□□ -0.29
PIK3C3-212ENST00000590013 LHX8Q68G74 356 aa13.24□□□□□ -0.29
PIK3C3-212ENST00000590013 PLEKHG5O94827 1062 aa13.23□□□□□ -0.29
PIK3C3-212ENST00000590013 GALR2O43603 387 aaPredicted RBP13.2□□□□□ -0.3
PIK3C3-212ENST00000590013 PHF12Q96QT6 1004 aa13.19□□□□□ -0.3
PIK3C3-212ENST00000590013 MIER1Q8N108 512 aa13.17□□□□□ -0.3
PIK3C3-212ENST00000590013 FKBP8Q14318 412 aa13.13□□□□□ -0.31
PIK3C3-212ENST00000590013 TSPYL2Q9H2G4 693 aaPredicted RBP13.08□□□□□ -0.32
PIK3C3-212ENST00000590013 ZBTB47Q9UFB7 747 aaPredicted RBP13.08□□□□□ -0.32
PIK3C3-212ENST00000590013 CCDC61Q9Y6R9 512 aa13.08□□□□□ -0.32
PIK3C3-212ENST00000590013 PLCD3Q8N3E9 789 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms