RNA–Protein interactions for RNA: ENST00000584878.1

NLK-206, Transcript of nemo like kinase, humanhuman

TSL 1 (best)

Gene NLK, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NLK-206ENST00000584878 AEBP2Q6ZN18 517 aaPredicted RBP28.07■■■□□ 2.08
NLK-206ENST00000584878 CHIC1Q5VXU3 224 aa27.08■■□□□ 1.93
NLK-206ENST00000584878 PHF23Q9BUL5 403 aaPredicted RBP23.85■■□□□ 1.41
NLK-206ENST00000584878 SENP3Q9H4L4 574 aaPredicted RBP23.76■■□□□ 1.39
NLK-206ENST00000584878 FOXD1Q16676 465 aa22.15■■□□□ 1.14
NLK-206ENST00000584878 PLPPR3Q6T4P5 718 aa21.84■■□□□ 1.09
NLK-206ENST00000584878 PPP6R1Q9UPN7 881 aa21.15■□□□□ 0.98
NLK-206ENST00000584878 ADRA2BP18089 450 aa21.12■□□□□ 0.97
NLK-206ENST00000584878 PIAS4Q8N2W9 510 aaPredicted RBP20.83■□□□□ 0.93
NLK-206ENST00000584878 POTEDQ86YR6 584 aa20.65■□□□□ 0.9
NLK-206ENST00000584878 MSH5O43196 834 aa20.43■□□□□ 0.86
NLK-206ENST00000584878 PPP4R3CPQ6ZMV5 832 aa19.26■□□□□ 0.67
NLK-206ENST00000584878 MAPK8IP2Q13387 824 aaPredicted RBP19.25■□□□□ 0.67
NLK-206ENST00000584878 SCAF1Q9H7N4 1312 aaKnown RBP19.16■□□□□ 0.66
NLK-206ENST00000584878 DMRT2Q9Y5R5 561 aa18.94■□□□□ 0.62
NLK-206ENST00000584878 CNKSR2Q8WXI2 1034 aa18.73■□□□□ 0.59
NLK-206ENST00000584878 NCBP3Q53F19 620 aaKnown RBP18.6■□□□□ 0.57
NLK-206ENST00000584878 KCNA4P22459 653 aa18.58■□□□□ 0.56
NLK-206ENST00000584878 HOXD11P31277 338 aaPredicted RBP18.43■□□□□ 0.54
NLK-206ENST00000584878 NPM3O75607 178 aaKnown RBP18.42■□□□□ 0.54
NLK-206ENST00000584878 RNF216Q9NWF9 866 aaPredicted RBP18.42■□□□□ 0.54
NLK-206ENST00000584878 DCAF8L1A6NGE4 600 aa18.21■□□□□ 0.51
NLK-206ENST00000584878 DNAJC5BQ9UF47 199 aa17.77■□□□□ 0.44
NLK-206ENST00000584878 SLC4A1APQ9BWU0 796 aaKnown RBP17.6■□□□□ 0.41
NLK-206ENST00000584878 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.59■□□□□ 0.41
NLK-206ENST00000584878 CACNB1Q02641 598 aaPredicted RBP17.58■□□□□ 0.4
NLK-206ENST00000584878 RNF39Q9H2S5 420 aa17.53■□□□□ 0.4
NLK-206ENST00000584878 SLC4A2P04920 1241 aa17.48■□□□□ 0.39
NLK-206ENST00000584878 U3KPZ7 1027 aaPredicted RBP17.31■□□□□ 0.36
NLK-206ENST00000584878 C1QBPQ07021 282 aaKnown RBP17.25■□□□□ 0.35
NLK-206ENST00000584878 ZBTB22O15209 634 aa17.11■□□□□ 0.33
NLK-206ENST00000584878 FOXD4L1Q9NU39 408 aa17.1■□□□□ 0.33
NLK-206ENST00000584878 MYCNP04198 464 aaPredicted RBP16.98■□□□□ 0.31
NLK-206ENST00000584878 SPINK5Q9NQ38 1064 aaPredicted RBP16.94■□□□□ 0.3
NLK-206ENST00000584878 EHMT2Q96KQ7 1210 aa16.88■□□□□ 0.29
NLK-206ENST00000584878 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.87■□□□□ 0.29
NLK-206ENST00000584878 HNRNPUL2Q1KMD3 747 aaKnown RBP16.87■□□□□ 0.29
NLK-206ENST00000584878 CAPN15O75808 1086 aa16.85■□□□□ 0.29
NLK-206ENST00000584878 SAMD1Q6SPF0 538 aaPredicted RBP16.84■□□□□ 0.29
NLK-206ENST00000584878 CSRNP3Q8WYN3 585 aa16.75■□□□□ 0.27
NLK-206ENST00000584878 APLP2Q06481 763 aa16.74■□□□□ 0.27
NLK-206ENST00000584878 TRHP20396 242 aaPredicted RBP16.72■□□□□ 0.27
NLK-206ENST00000584878 ATF5Q9Y2D1 282 aaPredicted RBP16.65■□□□□ 0.26
NLK-206ENST00000584878 ZNF219Q9P2Y4 722 aaPredicted RBP16.62■□□□□ 0.25
NLK-206ENST00000584878 DSG3P32926 999 aa16.61■□□□□ 0.25
NLK-206ENST00000584878 ABCB7O75027 752 aa16.56■□□□□ 0.24
NLK-206ENST00000584878 ATXN8OSP0DMR3 200 aa16.44■□□□□ 0.22
NLK-206ENST00000584878 POLA2Q14181 598 aa16.37■□□□□ 0.21
NLK-206ENST00000584878 POTEHQ6S545 545 aa16.05■□□□□ 0.16
NLK-206ENST00000584878 ZBTB12Q9Y330 459 aaPredicted RBP15.97■□□□□ 0.15
NLK-206ENST00000584878 MKRN4PQ13434 485 aaPredicted RBP15.89■□□□□ 0.13
NLK-206ENST00000584878 OSCARQ8IYS5 282 aa15.87■□□□□ 0.13
NLK-206ENST00000584878 FBLN2P98095 1184 aa15.85■□□□□ 0.13
NLK-206ENST00000584878 RBM42Q9BTD8 480 aaKnown RBP15.76■□□□□ 0.11
NLK-206ENST00000584878 SPDYE2BA6NHP3 402 aa15.56■□□□□ 0.08
NLK-206ENST00000584878 SPDYE6P0CI01 402 aa15.56■□□□□ 0.08
NLK-206ENST00000584878 SPDYE2Q495Y8 402 aa15.56■□□□□ 0.08
NLK-206ENST00000584878 AKT1S1Q96B36 256 aa15.53■□□□□ 0.08
NLK-206ENST00000584878 ZNF692Q9BU19 519 aaPredicted RBP15.5■□□□□ 0.07
NLK-206ENST00000584878 SSUH2Q9Y2M2 353 aa15.44■□□□□ 0.06
NLK-206ENST00000584878 REM2Q8IYK8 340 aaPredicted RBP15.43■□□□□ 0.06
NLK-206ENST00000584878 SPDYE4A6NLX3 237 aa15.36■□□□□ 0.05
NLK-206ENST00000584878 PABPN1Q86U42 306 aaKnown RBP eCLIP15.32■□□□□ 0.04
NLK-206ENST00000584878 PITPNM1O00562 1244 aa15.29■□□□□ 0.04
NLK-206ENST00000584878 CHRDL2Q6WN34 429 aa15.28■□□□□ 0.04
NLK-206ENST00000584878 CLEC11AQ9Y240 323 aa15.2■□□□□ 0.02
NLK-206ENST00000584878 FKBP8Q14318 412 aa15.17■□□□□ 0.02
NLK-206ENST00000584878 SPDYE1Q8NFV5 336 aaPredicted RBP15.17■□□□□ 0.02
NLK-206ENST00000584878 PIP4P2Q8N4L2 257 aa15.05■□□□□ -0
NLK-206ENST00000584878 PROM2Q8N271 834 aa15.03■□□□□ -0
NLK-206ENST00000584878 FXR2P51116 673 aaKnown RBP eCLIP15□□□□□ -0.01
NLK-206ENST00000584878 PRR29P0C7W0 189 aa14.97□□□□□ -0.01
NLK-206ENST00000584878 STAG3Q9UJ98 1225 aa14.9□□□□□ -0.02
NLK-206ENST00000584878 PRKAR2AP13861 404 aaKnown RBP14.89□□□□□ -0.03
NLK-206ENST00000584878 CHADLQ6NUI6 762 aa14.89□□□□□ -0.03
NLK-206ENST00000584878 SP7Q8TDD2 431 aaPredicted RBP14.76□□□□□ -0.05
NLK-206ENST00000584878 CREBZFQ9NS37 354 aa14.75□□□□□ -0.05
NLK-206ENST00000584878 FARP1Q9Y4F1 1045 aaPredicted RBP14.65□□□□□ -0.06
NLK-206ENST00000584878 HAX1O00165 279 aa14.63□□□□□ -0.07
NLK-206ENST00000584878 MIER1Q8N108 512 aa14.59□□□□□ -0.07
NLK-206ENST00000584878 FBXO3Q9UK99 471 aa14.58□□□□□ -0.08
NLK-206ENST00000584878 MNX1P50219 401 aaPredicted RBP14.56□□□□□ -0.08
NLK-206ENST00000584878 EVX2Q03828 476 aa14.55□□□□□ -0.08
NLK-206ENST00000584878 PLCD3Q8N3E9 789 aa14.55□□□□□ -0.08
NLK-206ENST00000584878 C19orf67A6NJJ6 358 aa14.5□□□□□ -0.09
NLK-206ENST00000584878 VASPP50552 380 aaPredicted RBP14.48□□□□□ -0.09
NLK-206ENST00000584878 PLEKHG5O94827 1062 aa14.46□□□□□ -0.09
NLK-206ENST00000584878 CD44P16070 742 aaKnown RBP14.44□□□□□ -0.1
NLK-206ENST00000584878 NPM1P06748 294 aaKnown RBP eCLIP14.42□□□□□ -0.1
NLK-206ENST00000584878 ZRANB1Q9UGI0 708 aa14.33□□□□□ -0.12
NLK-206ENST00000584878 ZBTB47Q9UFB7 747 aaPredicted RBP14.3□□□□□ -0.12
NLK-206ENST00000584878 RASEFQ8IZ41 740 aa14.29□□□□□ -0.12
NLK-206ENST00000584878 KLHL34Q8N239 644 aa14.29□□□□□ -0.12
NLK-206ENST00000584878 TSPYL2Q9H2G4 693 aaPredicted RBP14.29□□□□□ -0.12
NLK-206ENST00000584878 IFNLR1Q8IU57 520 aaPredicted RBP14.28□□□□□ -0.12
NLK-206ENST00000584878 PAK3O75914 559 aaPredicted RBP14.26□□□□□ -0.13
NLK-206ENST00000584878 NUBP1P53384 320 aa14.26□□□□□ -0.13
NLK-206ENST00000584878 PHF12Q96QT6 1004 aa14.22□□□□□ -0.13
NLK-206ENST00000584878 ZNF579Q8NAF0 562 aaKnown RBP14.21□□□□□ -0.13
NLK-206ENST00000584878 GABBR2O75899 941 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms