RNA–Protein interactions for RNA: ENST00000584754.1

PPP4R1-229, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 5

Gene PPP4R1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-229ENST00000584754 AEBP2Q6ZN18 517 aaPredicted RBP21.11■□□□□ 0.97
PPP4R1-229ENST00000584754 CHIC1Q5VXU3 224 aa19.88■□□□□ 0.77
PPP4R1-229ENST00000584754 SENP3Q9H4L4 574 aaPredicted RBP18.1■□□□□ 0.49
PPP4R1-229ENST00000584754 PHF23Q9BUL5 403 aaPredicted RBP17.84■□□□□ 0.45
PPP4R1-229ENST00000584754 FOXD1Q16676 465 aa16.87■□□□□ 0.29
PPP4R1-229ENST00000584754 MSH5O43196 834 aa15.89■□□□□ 0.13
PPP4R1-229ENST00000584754 PLPPR3Q6T4P5 718 aa15.89■□□□□ 0.13
PPP4R1-229ENST00000584754 POTEDQ86YR6 584 aa15.81■□□□□ 0.12
PPP4R1-229ENST00000584754 PIAS4Q8N2W9 510 aaPredicted RBP15.78■□□□□ 0.12
PPP4R1-229ENST00000584754 PPP6R1Q9UPN7 881 aa15.61■□□□□ 0.09
PPP4R1-229ENST00000584754 ADRA2BP18089 450 aa15.6■□□□□ 0.09
PPP4R1-229ENST00000584754 MAPK8IP2Q13387 824 aaPredicted RBP14.38□□□□□ -0.11
PPP4R1-229ENST00000584754 SCAF1Q9H7N4 1312 aaKnown RBP14.32□□□□□ -0.12
PPP4R1-229ENST00000584754 DMRT2Q9Y5R5 561 aa14.29□□□□□ -0.12
PPP4R1-229ENST00000584754 PPP4R3CPQ6ZMV5 832 aa14.05□□□□□ -0.16
PPP4R1-229ENST00000584754 DCAF8L1A6NGE4 600 aa13.89□□□□□ -0.19
PPP4R1-229ENST00000584754 CACNB1Q02641 598 aaPredicted RBP13.82□□□□□ -0.2
PPP4R1-229ENST00000584754 HOXD11P31277 338 aaPredicted RBP13.66□□□□□ -0.22
PPP4R1-229ENST00000584754 CNKSR2Q8WXI2 1034 aa13.64□□□□□ -0.23
PPP4R1-229ENST00000584754 KCNA4P22459 653 aa13.6□□□□□ -0.23
PPP4R1-229ENST00000584754 NCBP3Q53F19 620 aaKnown RBP13.55□□□□□ -0.24
PPP4R1-229ENST00000584754 RNF216Q9NWF9 866 aaPredicted RBP13.54□□□□□ -0.24
PPP4R1-229ENST00000584754 RNF39Q9H2S5 420 aa13.5□□□□□ -0.25
PPP4R1-229ENST00000584754 NPM3O75607 178 aaKnown RBP13.45□□□□□ -0.26
PPP4R1-229ENST00000584754 C1QBPQ07021 282 aaKnown RBP13.32□□□□□ -0.28
PPP4R1-229ENST00000584754 DNAJC5BQ9UF47 199 aa13.18□□□□□ -0.3
PPP4R1-229ENST00000584754 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.15□□□□□ -0.3
PPP4R1-229ENST00000584754 SLC4A1APQ9BWU0 796 aaKnown RBP12.87□□□□□ -0.35
PPP4R1-229ENST00000584754 SLC4A2P04920 1241 aa12.76□□□□□ -0.37
PPP4R1-229ENST00000584754 U3KPZ7 1027 aaPredicted RBP12.75□□□□□ -0.37
PPP4R1-229ENST00000584754 CAPN15O75808 1086 aa12.73□□□□□ -0.37
PPP4R1-229ENST00000584754 SPINK5Q9NQ38 1064 aaPredicted RBP12.66□□□□□ -0.38
PPP4R1-229ENST00000584754 DSG3P32926 999 aa12.59□□□□□ -0.39
PPP4R1-229ENST00000584754 ZBTB22O15209 634 aa12.55□□□□□ -0.4
PPP4R1-229ENST00000584754 TRHP20396 242 aaPredicted RBP12.47□□□□□ -0.41
PPP4R1-229ENST00000584754 APLP2Q06481 763 aa12.47□□□□□ -0.41
PPP4R1-229ENST00000584754 FOXD4L1Q9NU39 408 aa12.46□□□□□ -0.41
PPP4R1-229ENST00000584754 EHMT2Q96KQ7 1210 aa12.44□□□□□ -0.42
PPP4R1-229ENST00000584754 ABCB7O75027 752 aa12.4□□□□□ -0.42
PPP4R1-229ENST00000584754 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.39□□□□□ -0.43
PPP4R1-229ENST00000584754 HNRNPUL2Q1KMD3 747 aaKnown RBP12.39□□□□□ -0.43
PPP4R1-229ENST00000584754 ZNF219Q9P2Y4 722 aaPredicted RBP12.39□□□□□ -0.43
PPP4R1-229ENST00000584754 POTEHQ6S545 545 aa12.38□□□□□ -0.43
PPP4R1-229ENST00000584754 MYCNP04198 464 aaPredicted RBP12.35□□□□□ -0.43
PPP4R1-229ENST00000584754 CSRNP3Q8WYN3 585 aa12.31□□□□□ -0.44
PPP4R1-229ENST00000584754 SAMD1Q6SPF0 538 aaPredicted RBP12.3□□□□□ -0.44
PPP4R1-229ENST00000584754 ATF5Q9Y2D1 282 aaPredicted RBP12.2□□□□□ -0.46
PPP4R1-229ENST00000584754 RBM42Q9BTD8 480 aaKnown RBP12.07□□□□□ -0.48
PPP4R1-229ENST00000584754 POLA2Q14181 598 aa12.06□□□□□ -0.48
PPP4R1-229ENST00000584754 ATXN8OSP0DMR3 200 aa11.97□□□□□ -0.49
PPP4R1-229ENST00000584754 CHRDL2Q6WN34 429 aa11.87□□□□□ -0.51
PPP4R1-229ENST00000584754 ZBTB12Q9Y330 459 aaPredicted RBP11.79□□□□□ -0.52
PPP4R1-229ENST00000584754 AKT1S1Q96B36 256 aa11.72□□□□□ -0.53
PPP4R1-229ENST00000584754 OSCARQ8IYS5 282 aa11.67□□□□□ -0.54
PPP4R1-229ENST00000584754 REM2Q8IYK8 340 aaPredicted RBP11.63□□□□□ -0.55
PPP4R1-229ENST00000584754 MKRN4PQ13434 485 aaPredicted RBP11.61□□□□□ -0.55
PPP4R1-229ENST00000584754 FBLN2P98095 1184 aa11.54□□□□□ -0.56
PPP4R1-229ENST00000584754 PIP4P2Q8N4L2 257 aa11.53□□□□□ -0.56
PPP4R1-229ENST00000584754 SP7Q8TDD2 431 aaPredicted RBP11.51□□□□□ -0.57
PPP4R1-229ENST00000584754 PITPNM1O00562 1244 aa11.5□□□□□ -0.57
PPP4R1-229ENST00000584754 HAX1O00165 279 aa11.46□□□□□ -0.57
PPP4R1-229ENST00000584754 FXR2P51116 673 aaKnown RBP eCLIP11.39□□□□□ -0.593e-9■■■■■ 34.7
PPP4R1-229ENST00000584754 SPDYE2BA6NHP3 402 aa11.38□□□□□ -0.59
PPP4R1-229ENST00000584754 SPDYE6P0CI01 402 aa11.38□□□□□ -0.59
PPP4R1-229ENST00000584754 SPDYE2Q495Y8 402 aa11.38□□□□□ -0.59
PPP4R1-229ENST00000584754 ZNF692Q9BU19 519 aaPredicted RBP11.32□□□□□ -0.6
PPP4R1-229ENST00000584754 CLEC11AQ9Y240 323 aa11.32□□□□□ -0.6
PPP4R1-229ENST00000584754 SPDYE1Q8NFV5 336 aaPredicted RBP11.26□□□□□ -0.61
PPP4R1-229ENST00000584754 SPDYE4A6NLX3 237 aa11.23□□□□□ -0.61
PPP4R1-229ENST00000584754 PRKAR2AP13861 404 aaKnown RBP11.23□□□□□ -0.61
PPP4R1-229ENST00000584754 SSUH2Q9Y2M2 353 aa11.22□□□□□ -0.61
PPP4R1-229ENST00000584754 EVX2Q03828 476 aa11.2□□□□□ -0.62
PPP4R1-229ENST00000584754 PABPN1Q86U42 306 aaKnown RBP eCLIP11.18□□□□□ -0.62
PPP4R1-229ENST00000584754 FKBP8Q14318 412 aa11.14□□□□□ -0.63
PPP4R1-229ENST00000584754 PRR29P0C7W0 189 aa11.08□□□□□ -0.64
PPP4R1-229ENST00000584754 CHADLQ6NUI6 762 aa11.07□□□□□ -0.64
PPP4R1-229ENST00000584754 C19orf67A6NJJ6 358 aa11.04□□□□□ -0.64
PPP4R1-229ENST00000584754 GABBR2O75899 941 aa10.96□□□□□ -0.65
PPP4R1-229ENST00000584754 PROM2Q8N271 834 aa10.95□□□□□ -0.66
PPP4R1-229ENST00000584754 CD44P16070 742 aaKnown RBP10.87□□□□□ -0.67
PPP4R1-229ENST00000584754 FARP1Q9Y4F1 1045 aaPredicted RBP10.86□□□□□ -0.67
PPP4R1-229ENST00000584754 STAG3Q9UJ98 1225 aa10.84□□□□□ -0.67
PPP4R1-229ENST00000584754 LHX8Q68G74 356 aa10.82□□□□□ -0.68
PPP4R1-229ENST00000584754 CREBZFQ9NS37 354 aa10.76□□□□□ -0.69
PPP4R1-229ENST00000584754 DCBLD2Q96PD2 775 aa10.71□□□□□ -0.69
PPP4R1-229ENST00000584754 ZRANB1Q9UGI0 708 aa10.71□□□□□ -0.69
PPP4R1-229ENST00000584754 CLCN6P51797 869 aa10.7□□□□□ -0.7
PPP4R1-229ENST00000584754 MIER1Q8N108 512 aa10.7□□□□□ -0.7
PPP4R1-229ENST00000584754 POTEIP0CG38 1075 aa10.68□□□□□ -0.7
PPP4R1-229ENST00000584754 FBXO3Q9UK99 471 aa10.65□□□□□ -0.7
PPP4R1-229ENST00000584754 PLCD3Q8N3E9 789 aa10.64□□□□□ -0.71
PPP4R1-229ENST00000584754 ZNF579Q8NAF0 562 aaKnown RBP10.64□□□□□ -0.71
PPP4R1-229ENST00000584754 MNX1P50219 401 aaPredicted RBP10.62□□□□□ -0.71
PPP4R1-229ENST00000584754 PAK3O75914 559 aaPredicted RBP10.61□□□□□ -0.71
PPP4R1-229ENST00000584754 VASPP50552 380 aaPredicted RBP10.59□□□□□ -0.71
PPP4R1-229ENST00000584754 NPM1P06748 294 aaKnown RBP eCLIP10.55□□□□□ -0.72
PPP4R1-229ENST00000584754 GALR2O43603 387 aaPredicted RBP10.54□□□□□ -0.72
PPP4R1-229ENST00000584754 PLEKHG5O94827 1062 aa10.53□□□□□ -0.72
PPP4R1-229ENST00000584754 PHF12Q96QT6 1004 aa10.52□□□□□ -0.73
PPP4R1-229ENST00000584754 IFNLR1Q8IU57 520 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms