RNA–Protein interactions for RNA: ENST00000584424.1

TTC39C-210, Transcript of tetratricopeptide repeat domain 39C, humanhuman

TSL 2

Gene TTC39C, Length 739 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39C-210ENST00000584424 AEBP2Q6ZN18 517 aaPredicted RBP27.93■■■□□ 2.06
TTC39C-210ENST00000584424 CHIC1Q5VXU3 224 aa26.33■■□□□ 1.81
TTC39C-210ENST00000584424 SENP3Q9H4L4 574 aaPredicted RBP23.84■■□□□ 1.41
TTC39C-210ENST00000584424 PHF23Q9BUL5 403 aaPredicted RBP23.54■■□□□ 1.36
TTC39C-210ENST00000584424 FOXD1Q16676 465 aa22.26■■□□□ 1.15
TTC39C-210ENST00000584424 PLPPR3Q6T4P5 718 aa20.97■□□□□ 0.95
TTC39C-210ENST00000584424 MSH5O43196 834 aa20.88■□□□□ 0.93
TTC39C-210ENST00000584424 PIAS4Q8N2W9 510 aaPredicted RBP20.8■□□□□ 0.92
TTC39C-210ENST00000584424 POTEDQ86YR6 584 aa20.71■□□□□ 0.91
TTC39C-210ENST00000584424 PPP6R1Q9UPN7 881 aa20.7■□□□□ 0.9
TTC39C-210ENST00000584424 ADRA2BP18089 450 aa20.65■□□□□ 0.9
TTC39C-210ENST00000584424 MAPK8IP2Q13387 824 aaPredicted RBP19.04■□□□□ 0.64
TTC39C-210ENST00000584424 SCAF1Q9H7N4 1312 aaKnown RBP18.86■□□□□ 0.61
TTC39C-210ENST00000584424 DMRT2Q9Y5R5 561 aa18.86■□□□□ 0.61
TTC39C-210ENST00000584424 PPP4R3CPQ6ZMV5 832 aa18.38■□□□□ 0.53
TTC39C-210ENST00000584424 DCAF8L1A6NGE4 600 aa18.27■□□□□ 0.52
TTC39C-210ENST00000584424 CACNB1Q02641 598 aaPredicted RBP18.11■□□□□ 0.49
TTC39C-210ENST00000584424 HOXD11P31277 338 aaPredicted RBP18.07■□□□□ 0.48
TTC39C-210ENST00000584424 CNKSR2Q8WXI2 1034 aa18.05■□□□□ 0.48
TTC39C-210ENST00000584424 RNF216Q9NWF9 866 aaPredicted RBP17.92■□□□□ 0.46
TTC39C-210ENST00000584424 RNF39Q9H2S5 420 aa17.79■□□□□ 0.44
TTC39C-210ENST00000584424 NCBP3Q53F19 620 aaKnown RBP17.62■□□□□ 0.41
TTC39C-210ENST00000584424 C1QBPQ07021 282 aaKnown RBP17.52■□□□□ 0.4
TTC39C-210ENST00000584424 DNAJC5BQ9UF47 199 aa17.4■□□□□ 0.38
TTC39C-210ENST00000584424 NPM3O75607 178 aaKnown RBP17.36■□□□□ 0.37
TTC39C-210ENST00000584424 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.34■□□□□ 0.37
TTC39C-210ENST00000584424 KCNA4P22459 653 aa16.9■□□□□ 0.3
TTC39C-210ENST00000584424 U3KPZ7 1027 aaPredicted RBP16.89■□□□□ 0.29
TTC39C-210ENST00000584424 CAPN15O75808 1086 aa16.76■□□□□ 0.27
TTC39C-210ENST00000584424 SPINK5Q9NQ38 1064 aaPredicted RBP16.75■□□□□ 0.27
TTC39C-210ENST00000584424 DSG3P32926 999 aa16.63■□□□□ 0.25
TTC39C-210ENST00000584424 SLC4A2P04920 1241 aa16.6■□□□□ 0.25
TTC39C-210ENST00000584424 TRHP20396 242 aaPredicted RBP16.47■□□□□ 0.23
TTC39C-210ENST00000584424 APLP2Q06481 763 aa16.39■□□□□ 0.21
TTC39C-210ENST00000584424 ABCB7O75027 752 aa16.37■□□□□ 0.21
TTC39C-210ENST00000584424 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.34■□□□□ 0.21
TTC39C-210ENST00000584424 HNRNPUL2Q1KMD3 747 aaKnown RBP16.34■□□□□ 0.21
TTC39C-210ENST00000584424 ZNF219Q9P2Y4 722 aaPredicted RBP16.34■□□□□ 0.21
TTC39C-210ENST00000584424 SAMD1Q6SPF0 538 aaPredicted RBP16.24■□□□□ 0.19
TTC39C-210ENST00000584424 POTEHQ6S545 545 aa16.21■□□□□ 0.19
TTC39C-210ENST00000584424 MYCNP04198 464 aaPredicted RBP16.05■□□□□ 0.16
TTC39C-210ENST00000584424 POLA2Q14181 598 aa15.93■□□□□ 0.14
TTC39C-210ENST00000584424 SLC4A1APQ9BWU0 796 aaKnown RBP15.92■□□□□ 0.14
TTC39C-210ENST00000584424 RBM42Q9BTD8 480 aaKnown RBP15.86■□□□□ 0.13
TTC39C-210ENST00000584424 FOXD4L1Q9NU39 408 aa15.8■□□□□ 0.12
TTC39C-210ENST00000584424 ATF5Q9Y2D1 282 aaPredicted RBP15.74■□□□□ 0.11
TTC39C-210ENST00000584424 CHRDL2Q6WN34 429 aa15.61■□□□□ 0.09
TTC39C-210ENST00000584424 ZBTB12Q9Y330 459 aaPredicted RBP15.53■□□□□ 0.08
TTC39C-210ENST00000584424 ZBTB22O15209 634 aa15.51■□□□□ 0.07
TTC39C-210ENST00000584424 OSCARQ8IYS5 282 aa15.45■□□□□ 0.06
TTC39C-210ENST00000584424 AKT1S1Q96B36 256 aa15.45■□□□□ 0.06
TTC39C-210ENST00000584424 REM2Q8IYK8 340 aaPredicted RBP15.34■□□□□ 0.05
TTC39C-210ENST00000584424 ATXN8OSP0DMR3 200 aa15.27■□□□□ 0.04
TTC39C-210ENST00000584424 PIP4P2Q8N4L2 257 aa15.2■□□□□ 0.02
TTC39C-210ENST00000584424 PITPNM1O00562 1244 aa15.18■□□□□ 0.02
TTC39C-210ENST00000584424 FBLN2P98095 1184 aa15.14■□□□□ 0.01
TTC39C-210ENST00000584424 SP7Q8TDD2 431 aaPredicted RBP15.1■□□□□ 0.01
TTC39C-210ENST00000584424 SPDYE2BA6NHP3 402 aa15.05■□□□□ -0
TTC39C-210ENST00000584424 SPDYE6P0CI01 402 aa15.05■□□□□ -0
TTC39C-210ENST00000584424 SPDYE2Q495Y8 402 aa15.05■□□□□ -0
TTC39C-210ENST00000584424 HAX1O00165 279 aa15.04■□□□□ -0
TTC39C-210ENST00000584424 FXR2P51116 673 aaKnown RBP eCLIP15.04■□□□□ -0
TTC39C-210ENST00000584424 MKRN4PQ13434 485 aaPredicted RBP14.96□□□□□ -0.01
TTC39C-210ENST00000584424 CLEC11AQ9Y240 323 aa14.93□□□□□ -0.02
TTC39C-210ENST00000584424 ZNF692Q9BU19 519 aaPredicted RBP14.91□□□□□ -0.02
TTC39C-210ENST00000584424 SPDYE1Q8NFV5 336 aaPredicted RBP14.85□□□□□ -0.03
TTC39C-210ENST00000584424 PRKAR2AP13861 404 aaKnown RBP14.81□□□□□ -0.04
TTC39C-210ENST00000584424 SSUH2Q9Y2M2 353 aa14.8□□□□□ -0.04
TTC39C-210ENST00000584424 EVX2Q03828 476 aa14.79□□□□□ -0.04
TTC39C-210ENST00000584424 PABPN1Q86U42 306 aaKnown RBP eCLIP14.68□□□□□ -0.06
TTC39C-210ENST00000584424 CHADLQ6NUI6 762 aa14.65□□□□□ -0.06
TTC39C-210ENST00000584424 CSRNP3Q8WYN3 585 aa14.64□□□□□ -0.07
TTC39C-210ENST00000584424 PRR29P0C7W0 189 aa14.62□□□□□ -0.07
TTC39C-210ENST00000584424 C19orf67A6NJJ6 358 aa14.57□□□□□ -0.08
TTC39C-210ENST00000584424 EHMT2Q96KQ7 1210 aa14.46□□□□□ -0.09
TTC39C-210ENST00000584424 GABBR2O75899 941 aa14.45□□□□□ -0.1
TTC39C-210ENST00000584424 FARP1Q9Y4F1 1045 aaPredicted RBP14.35□□□□□ -0.11
TTC39C-210ENST00000584424 CD44P16070 742 aaKnown RBP14.33□□□□□ -0.12
TTC39C-210ENST00000584424 SPDYE4A6NLX3 237 aa14.21□□□□□ -0.13
TTC39C-210ENST00000584424 LHX8Q68G74 356 aa14.19□□□□□ -0.14
TTC39C-210ENST00000584424 STAG3Q9UJ98 1225 aa14.19□□□□□ -0.14
TTC39C-210ENST00000584424 CREBZFQ9NS37 354 aa14.16□□□□□ -0.14
TTC39C-210ENST00000584424 ZRANB1Q9UGI0 708 aa14.13□□□□□ -0.15
TTC39C-210ENST00000584424 POTEIP0CG38 1075 aa14.11□□□□□ -0.15
TTC39C-210ENST00000584424 CLCN6P51797 869 aa14.06□□□□□ -0.16
TTC39C-210ENST00000584424 DCBLD2Q96PD2 775 aa14.06□□□□□ -0.16
TTC39C-210ENST00000584424 ZNF579Q8NAF0 562 aaKnown RBP14.04□□□□□ -0.16
TTC39C-210ENST00000584424 PAK3O75914 559 aaPredicted RBP13.96□□□□□ -0.17
TTC39C-210ENST00000584424 GALR2O43603 387 aaPredicted RBP13.94□□□□□ -0.18
TTC39C-210ENST00000584424 NPM1P06748 294 aaKnown RBP eCLIP13.92□□□□□ -0.18
TTC39C-210ENST00000584424 PHF12Q96QT6 1004 aa13.91□□□□□ -0.18
TTC39C-210ENST00000584424 MNX1P50219 401 aaPredicted RBP13.86□□□□□ -0.19
TTC39C-210ENST00000584424 TSPYL2Q9H2G4 693 aaPredicted RBP13.73□□□□□ -0.21
TTC39C-210ENST00000584424 PROM2Q8N271 834 aa13.71□□□□□ -0.21
TTC39C-210ENST00000584424 MS4A3Q96HJ5 214 aa13.7□□□□□ -0.22
TTC39C-210ENST00000584424 PELP1Q8IZL8 1130 aaKnown RBP13.67□□□□□ -0.22
TTC39C-210ENST00000584424 POTEB2H3BUK9 544 aa13.66□□□□□ -0.22
TTC39C-210ENST00000584424 OTUD5Q96G74 571 aa13.64□□□□□ -0.23
TTC39C-210ENST00000584424 MIER1Q8N108 512 aa13.62□□□□□ -0.23
TTC39C-210ENST00000584424 PLEKHG5O94827 1062 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms