RNA–Protein interactions for RNA: ENST00000583569.5

NUP85-222, Transcript of nucleoporin 85, human

TSL 5

Gene NUP85, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-222	ENST00000583569	AEBP2	Q6ZN18	517 aa	Predicted RBP	21.08	■□□□□ 0.97
NUP85-222	ENST00000583569	CHIC1	Q5VXU3	224 aa		20.84	■□□□□ 0.93
NUP85-222	ENST00000583569	PHF23	Q9BUL5	403 aa	Predicted RBP	18.35	■□□□□ 0.53
NUP85-222	ENST00000583569	SENP3	Q9H4L4	574 aa	Predicted RBP	17.88	■□□□□ 0.45
NUP85-222	ENST00000583569	PLPPR3	Q6T4P5	718 aa		17.07	■□□□□ 0.32
NUP85-222	ENST00000583569	FOXD1	Q16676	465 aa		16.55	■□□□□ 0.24
NUP85-222	ENST00000583569	ADRA2B	P18089	450 aa		16.14	■□□□□ 0.17
NUP85-222	ENST00000583569	PPP6R1	Q9UPN7	881 aa		16.12	■□□□□ 0.17
NUP85-222	ENST00000583569	PIAS4	Q8N2W9	510 aa	Predicted RBP	15.7	■□□□□ 0.1
NUP85-222	ENST00000583569	MSH5	O43196	834 aa		15.18	■□□□□ 0.02
NUP85-222	ENST00000583569	PPP4R3CP	Q6ZMV5	832 aa		15.07	■□□□□ 0
NUP85-222	ENST00000583569	KCNA4	P22459	653 aa		15	□□□□□ -0.01
NUP85-222	ENST00000583569	SCAF1	Q9H7N4	1312 aa	Known RBP	14.8	□□□□□ -0.04
NUP85-222	ENST00000583569	NCBP3	Q53F19	620 aa	Known RBP	14.77	□□□□□ -0.05
NUP85-222	ENST00000583569	CNKSR2	Q8WXI2	1034 aa		14.59	□□□□□ -0.07
NUP85-222	ENST00000583569	MAPK8IP2	Q13387	824 aa	Predicted RBP	14.57	□□□□□ -0.08
NUP85-222	ENST00000583569	NPM3	O75607	178 aa	Known RBP	14.52	□□□□□ -0.09
NUP85-222	ENST00000583569	SLC4A1AP	Q9BWU0	796 aa	Known RBP	14.36	□□□□□ -0.11
NUP85-222	ENST00000583569	DMRT2	Q9Y5R5	561 aa		14.3	□□□□□ -0.12
NUP85-222	ENST00000583569	EHMT2	Q96KQ7	1210 aa		14.27	□□□□□ -0.13
NUP85-222	ENST00000583569	RNF216	Q9NWF9	866 aa	Predicted RBP	14.23	□□□□□ -0.13
NUP85-222	ENST00000583569	HOXD11	P31277	338 aa	Predicted RBP	14.09	□□□□□ -0.15
NUP85-222	ENST00000583569	DNAJC5B	Q9UF47	199 aa		14.01	□□□□□ -0.17
NUP85-222	ENST00000583569	CSRNP3	Q8WYN3	585 aa		13.93	□□□□□ -0.18
NUP85-222	ENST00000583569	ZBTB22	O15209	634 aa		13.79	□□□□□ -0.2
NUP85-222	ENST00000583569	DCAF8L1	A6NGE4	600 aa		13.74	□□□□□ -0.21
NUP85-222	ENST00000583569	FOXD4L1	Q9NU39	408 aa		13.73	□□□□□ -0.21
NUP85-222	ENST00000583569	SLC4A2	P04920	1241 aa		13.63	□□□□□ -0.23
NUP85-222	ENST00000583569	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.49	□□□□□ -0.25
NUP85-222	ENST00000583569	MYCN	P04198	464 aa	Predicted RBP	13.42	□□□□□ -0.26
NUP85-222	ENST00000583569	POTED	Q86YR6	584 aa		13.36	□□□□□ -0.27
NUP85-222	ENST00000583569		U3KPZ7	1027 aa	Predicted RBP	13.25	□□□□□ -0.29
NUP85-222	ENST00000583569	ATXN8OS	P0DMR3	200 aa		13.23	□□□□□ -0.29
NUP85-222	ENST00000583569	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.21	□□□□□ -0.29
NUP85-222	ENST00000583569	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.21	□□□□□ -0.29
NUP85-222	ENST00000583569	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.17	□□□□□ -0.3
NUP85-222	ENST00000583569	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.03	□□□□□ -0.32
NUP85-222	ENST00000583569	APLP2	Q06481	763 aa		13.02	□□□□□ -0.33
NUP85-222	ENST00000583569	RNF39	Q9H2S5	420 aa		13.01	□□□□□ -0.33
NUP85-222	ENST00000583569	C1QBP	Q07021	282 aa	Known RBP	12.88	□□□□□ -0.35
NUP85-222	ENST00000583569	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.83	□□□□□ -0.36
NUP85-222	ENST00000583569	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.82	□□□□□ -0.36
NUP85-222	ENST00000583569	CAPN15	O75808	1086 aa		12.79	□□□□□ -0.36
NUP85-222	ENST00000583569	TRH	P20396	242 aa	Predicted RBP	12.79	□□□□□ -0.36
NUP85-222	ENST00000583569	POLA2	Q14181	598 aa		12.63	□□□□□ -0.39
NUP85-222	ENST00000583569	FKBP8	Q14318	412 aa		12.61	□□□□□ -0.39
NUP85-222	ENST00000583569	ABCB7	O75027	752 aa		12.56	□□□□□ -0.4
NUP85-222	ENST00000583569	CACNB1	Q02641	598 aa	Predicted RBP	12.53	□□□□□ -0.4
NUP85-222	ENST00000583569	FBLN2	P98095	1184 aa		12.52	□□□□□ -0.41
NUP85-222	ENST00000583569	DSG3	P32926	999 aa		12.47	□□□□□ -0.41
NUP85-222	ENST00000583569	MKRN4P	Q13434	485 aa	Predicted RBP	12.47	□□□□□ -0.41
NUP85-222	ENST00000583569	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.44	□□□□□ -0.42
NUP85-222	ENST00000583569	SPDYE4	A6NLX3	237 aa		12.35	□□□□□ -0.43
NUP85-222	ENST00000583569	OSCAR	Q8IYS5	282 aa		12.19	□□□□□ -0.46
NUP85-222	ENST00000583569	PROM2	Q8N271	834 aa		12.13	□□□□□ -0.47
NUP85-222	ENST00000583569	ZNF692	Q9BU19	519 aa	Predicted RBP	12.13	□□□□□ -0.47
NUP85-222	ENST00000583569	SPDYE2B	A6NHP3	402 aa		12.11	□□□□□ -0.47
NUP85-222	ENST00000583569	SPDYE6	P0CI01	402 aa		12.11	□□□□□ -0.47
NUP85-222	ENST00000583569	SPDYE2	Q495Y8	402 aa		12.11	□□□□□ -0.47
NUP85-222	ENST00000583569	FBXO3	Q9UK99	471 aa		12.1	□□□□□ -0.47
NUP85-222	ENST00000583569	SSUH2	Q9Y2M2	353 aa		12.02	□□□□□ -0.49
NUP85-222	ENST00000583569	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.97	□□□□□ -0.49
NUP85-222	ENST00000583569	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.94	□□□□□ -0.5
NUP85-222	ENST00000583569	VASP	P50552	380 aa	Predicted RBP	11.91	□□□□□ -0.5
NUP85-222	ENST00000583569	RBM42	Q9BTD8	480 aa	Known RBP	11.9	□□□□□ -0.5
NUP85-222	ENST00000583569	RTN4	Q9NQC3	1192 aa	Known RBP	11.9	□□□□□ -0.5
NUP85-222	ENST00000583569	STAG3	Q9UJ98	1225 aa		11.84	□□□□□ -0.51
NUP85-222	ENST00000583569	AKT1S1	Q96B36	256 aa		11.8	□□□□□ -0.52
NUP85-222	ENST00000583569	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.76	□□□□□ -0.53
NUP85-222	ENST00000583569	PLCD3	Q8N3E9	789 aa		11.73	□□□□□ -0.53
NUP85-222	ENST00000583569	MIER1	Q8N108	512 aa		11.72	□□□□□ -0.53
NUP85-222	ENST00000583569	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.71	□□□□□ -0.53
NUP85-222	ENST00000583569	REM2	Q8IYK8	340 aa	Predicted RBP	11.69	□□□□□ -0.54
NUP85-222	ENST00000583569	KLHL34	Q8N239	644 aa		11.69	□□□□□ -0.54
NUP85-222	ENST00000583569	CLEC11A	Q9Y240	323 aa		11.66	□□□□□ -0.54
NUP85-222	ENST00000583569	PLEKHG5	O94827	1062 aa		11.65	□□□□□ -0.54
NUP85-222	ENST00000583569	SPOCK2	Q92563	424 aa		11.6	□□□□□ -0.55
NUP85-222	ENST00000583569	PRR29	P0C7W0	189 aa		11.59	□□□□□ -0.55
NUP85-222	ENST00000583569	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.57	□□□□□ -0.56
NUP85-222	ENST00000583569	PITPNM1	O00562	1244 aa		11.55	□□□□□ -0.56
NUP85-222	ENST00000583569	PKD2	Q13563	968 aa		11.46	□□□□□ -0.57
NUP85-222	ENST00000583569	CREBZF	Q9NS37	354 aa		11.46	□□□□□ -0.57
NUP85-222	ENST00000583569	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.4	□□□□□ -0.58
NUP85-222	ENST00000583569	ECM2	O94769	699 aa	Predicted RBP	11.37	□□□□□ -0.59
NUP85-222	ENST00000583569	DCAF8L2	P0C7V8	631 aa		11.37	□□□□□ -0.59
NUP85-222	ENST00000583569	MNX1	P50219	401 aa	Predicted RBP	11.36	□□□□□ -0.59
NUP85-222	ENST00000583569	NUBP1	P53384	320 aa		11.33	□□□□□ -0.6
NUP85-222	ENST00000583569	CHADL	Q6NUI6	762 aa		11.33	□□□□□ -0.6
NUP85-222	ENST00000583569	NPM1	P06748	294 aa	Known RBP eCLIP	11.32	□□□□□ -0.6
NUP85-222	ENST00000583569	GSE1	Q14687	1217 aa		11.31	□□□□□ -0.6
NUP85-222	ENST00000583569	DCAF8	Q5TAQ9	597 aa		11.3	□□□□□ -0.6
NUP85-222	ENST00000583569	CHRDL2	Q6WN34	429 aa		11.3	□□□□□ -0.6
NUP85-222	ENST00000583569	PRKAR2A	P13861	404 aa	Known RBP	11.28	□□□□□ -0.6
NUP85-222	ENST00000583569	FAM212A	Q96EL1	285 aa		11.28	□□□□□ -0.6
NUP85-222	ENST00000583569	FXR2	P51116	673 aa	Known RBP eCLIP	11.27	□□□□□ -0.61
NUP85-222	ENST00000583569	TRIM41	Q8WV44	630 aa		11.26	□□□□□ -0.61
NUP85-222	ENST00000583569	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.25	□□□□□ -0.61
NUP85-222	ENST00000583569	RASEF	Q8IZ41	740 aa		11.24	□□□□□ -0.61
NUP85-222	ENST00000583569	RGL2	O15211	777 aa		11.23	□□□□□ -0.61
NUP85-222	ENST00000583569	PIP4P2	Q8N4L2	257 aa		11.21	□□□□□ -0.61

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