RNA–Protein interactions for RNA: ENST00000583294.1

SMARCE1-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 476 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-219ENST00000583294 AEBP2Q6ZN18 517 aaPredicted RBP29.67■■■□□ 2.34
SMARCE1-219ENST00000583294 CHIC1Q5VXU3 224 aa28.38■■■□□ 2.13
SMARCE1-219ENST00000583294 SENP3Q9H4L4 574 aaPredicted RBP25.18■■□□□ 1.62
SMARCE1-219ENST00000583294 PHF23Q9BUL5 403 aaPredicted RBP24.97■■□□□ 1.59
SMARCE1-219ENST00000583294 FOXD1Q16676 465 aa23.5■■□□□ 1.35
SMARCE1-219ENST00000583294 PLPPR3Q6T4P5 718 aa22.77■■□□□ 1.24
SMARCE1-219ENST00000583294 PPP6R1Q9UPN7 881 aa22.23■■□□□ 1.15
SMARCE1-219ENST00000583294 ADRA2BP18089 450 aa22.17■■□□□ 1.14
SMARCE1-219ENST00000583294 PIAS4Q8N2W9 510 aaPredicted RBP22■■□□□ 1.11
SMARCE1-219ENST00000583294 MSH5O43196 834 aa21.81■■□□□ 1.08
SMARCE1-219ENST00000583294 POTEDQ86YR6 584 aa20.92■□□□□ 0.94
SMARCE1-219ENST00000583294 MAPK8IP2Q13387 824 aaPredicted RBP20.31■□□□□ 0.84
SMARCE1-219ENST00000583294 SCAF1Q9H7N4 1312 aaKnown RBP20.18■□□□□ 0.82
SMARCE1-219ENST00000583294 PPP4R3CPQ6ZMV5 832 aa20.04■□□□□ 0.8
SMARCE1-219ENST00000583294 DMRT2Q9Y5R5 561 aa20.03■□□□□ 0.8
SMARCE1-219ENST00000583294 CNKSR2Q8WXI2 1034 aa19.56■□□□□ 0.72
SMARCE1-219ENST00000583294 HOXD11P31277 338 aaPredicted RBP19.39■□□□□ 0.69
SMARCE1-219ENST00000583294 RNF216Q9NWF9 866 aaPredicted RBP19.31■□□□□ 0.68
SMARCE1-219ENST00000583294 NCBP3Q53F19 620 aaKnown RBP19.29■□□□□ 0.68
SMARCE1-219ENST00000583294 DCAF8L1A6NGE4 600 aa19.24■□□□□ 0.67
SMARCE1-219ENST00000583294 NPM3O75607 178 aaKnown RBP19.07■□□□□ 0.64
SMARCE1-219ENST00000583294 KCNA4P22459 653 aa18.98■□□□□ 0.63
SMARCE1-219ENST00000583294 RNF39Q9H2S5 420 aa18.68■□□□□ 0.58
SMARCE1-219ENST00000583294 CACNB1Q02641 598 aaPredicted RBP18.62■□□□□ 0.57
SMARCE1-219ENST00000583294 DNAJC5BQ9UF47 199 aa18.6■□□□□ 0.57
SMARCE1-219ENST00000583294 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.51■□□□□ 0.553e-10■□□□□ 8.2
SMARCE1-219ENST00000583294 C1QBPQ07021 282 aaKnown RBP18.4■□□□□ 0.54
SMARCE1-219ENST00000583294 SLC4A2P04920 1241 aa18.16■□□□□ 0.5
SMARCE1-219ENST00000583294 U3KPZ7 1027 aaPredicted RBP18.15■□□□□ 0.5
SMARCE1-219ENST00000583294 SLC4A1APQ9BWU0 796 aaKnown RBP18.13■□□□□ 0.49
SMARCE1-219ENST00000583294 EHMT2Q96KQ7 1210 aa18.09■□□□□ 0.49
SMARCE1-219ENST00000583294 SPINK5Q9NQ38 1064 aaPredicted RBP17.84■□□□□ 0.45
SMARCE1-219ENST00000583294 CAPN15O75808 1086 aa17.77■□□□□ 0.44
SMARCE1-219ENST00000583294 CSRNP3Q8WYN3 585 aa17.65■□□□□ 0.42
SMARCE1-219ENST00000583294 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.64■□□□□ 0.41
SMARCE1-219ENST00000583294 HNRNPUL2Q1KMD3 747 aaKnown RBP17.64■□□□□ 0.41
SMARCE1-219ENST00000583294 DSG3P32926 999 aa17.6■□□□□ 0.41
SMARCE1-219ENST00000583294 MYCNP04198 464 aaPredicted RBP17.58■□□□□ 0.4
SMARCE1-219ENST00000583294 SAMD1Q6SPF0 538 aaPredicted RBP17.58■□□□□ 0.4
SMARCE1-219ENST00000583294 TRHP20396 242 aaPredicted RBP17.57■□□□□ 0.4
SMARCE1-219ENST00000583294 APLP2Q06481 763 aa17.56■□□□□ 0.4
SMARCE1-219ENST00000583294 FOXD4L1Q9NU39 408 aa17.56■□□□□ 0.4
SMARCE1-219ENST00000583294 ZBTB22O15209 634 aa17.47■□□□□ 0.39
SMARCE1-219ENST00000583294 ZNF219Q9P2Y4 722 aaPredicted RBP17.46■□□□□ 0.39
SMARCE1-219ENST00000583294 ABCB7O75027 752 aa17.41■□□□□ 0.38
SMARCE1-219ENST00000583294 ATF5Q9Y2D1 282 aaPredicted RBP17.25■□□□□ 0.35
SMARCE1-219ENST00000583294 POLA2Q14181 598 aa17.15■□□□□ 0.34
SMARCE1-219ENST00000583294 ATXN8OSP0DMR3 200 aa16.95■□□□□ 0.3
SMARCE1-219ENST00000583294 RBM42Q9BTD8 480 aaKnown RBP16.71■□□□□ 0.27
SMARCE1-219ENST00000583294 ZBTB12Q9Y330 459 aaPredicted RBP16.71■□□□□ 0.27
SMARCE1-219ENST00000583294 OSCARQ8IYS5 282 aa16.58■□□□□ 0.24
SMARCE1-219ENST00000583294 FBLN2P98095 1184 aa16.47■□□□□ 0.23
SMARCE1-219ENST00000583294 MKRN4PQ13434 485 aaPredicted RBP16.45■□□□□ 0.22
SMARCE1-219ENST00000583294 POTEHQ6S545 545 aa16.43■□□□□ 0.22
SMARCE1-219ENST00000583294 AKT1S1Q96B36 256 aa16.42■□□□□ 0.22
SMARCE1-219ENST00000583294 CHRDL2Q6WN34 429 aa16.3■□□□□ 0.2
SMARCE1-219ENST00000583294 REM2Q8IYK8 340 aaPredicted RBP16.3■□□□□ 0.2
SMARCE1-219ENST00000583294 SPDYE2BA6NHP3 402 aa16.27■□□□□ 0.2
SMARCE1-219ENST00000583294 SPDYE6P0CI01 402 aa16.27■□□□□ 0.2
SMARCE1-219ENST00000583294 SPDYE2Q495Y8 402 aa16.27■□□□□ 0.2
SMARCE1-219ENST00000583294 ZNF692Q9BU19 519 aaPredicted RBP16.16■□□□□ 0.18
SMARCE1-219ENST00000583294 PITPNM1O00562 1244 aa16.12■□□□□ 0.17
SMARCE1-219ENST00000583294 SSUH2Q9Y2M2 353 aa16.09■□□□□ 0.17
SMARCE1-219ENST00000583294 PIP4P2Q8N4L2 257 aa15.99■□□□□ 0.15
SMARCE1-219ENST00000583294 FKBP8Q14318 412 aa15.97■□□□□ 0.15
SMARCE1-219ENST00000583294 CLEC11AQ9Y240 323 aa15.94■□□□□ 0.14
SMARCE1-219ENST00000583294 PABPN1Q86U42 306 aaKnown RBP eCLIP15.93■□□□□ 0.14
SMARCE1-219ENST00000583294 SPDYE1Q8NFV5 336 aaPredicted RBP15.93■□□□□ 0.14
SMARCE1-219ENST00000583294 FXR2P51116 673 aaKnown RBP eCLIP15.92■□□□□ 0.14
SMARCE1-219ENST00000583294 SPDYE4A6NLX3 237 aa15.78■□□□□ 0.12
SMARCE1-219ENST00000583294 PRKAR2AP13861 404 aaKnown RBP15.71■□□□□ 0.11
SMARCE1-219ENST00000583294 PRR29P0C7W0 189 aa15.7■□□□□ 0.1
SMARCE1-219ENST00000583294 HAX1O00165 279 aa15.64■□□□□ 0.09
SMARCE1-219ENST00000583294 CHADLQ6NUI6 762 aa15.64■□□□□ 0.09
SMARCE1-219ENST00000583294 SP7Q8TDD2 431 aaPredicted RBP15.52■□□□□ 0.08
SMARCE1-219ENST00000583294 EVX2Q03828 476 aa15.51■□□□□ 0.07
SMARCE1-219ENST00000583294 STAG3Q9UJ98 1225 aa15.5■□□□□ 0.07
SMARCE1-219ENST00000583294 PROM2Q8N271 834 aa15.41■□□□□ 0.06
SMARCE1-219ENST00000583294 C19orf67A6NJJ6 358 aa15.4■□□□□ 0.06
SMARCE1-219ENST00000583294 FARP1Q9Y4F1 1045 aaPredicted RBP15.39■□□□□ 0.05
SMARCE1-219ENST00000583294 CREBZFQ9NS37 354 aa15.38■□□□□ 0.05
SMARCE1-219ENST00000583294 FBXO3Q9UK99 471 aa15.23■□□□□ 0.03
SMARCE1-219ENST00000583294 CD44P16070 742 aaKnown RBP15.22■□□□□ 0.03
SMARCE1-219ENST00000583294 RTN4Q9NQC3 1192 aaKnown RBP15.15■□□□□ 0.02
SMARCE1-219ENST00000583294 MNX1P50219 401 aaPredicted RBP15.14■□□□□ 0.01
SMARCE1-219ENST00000583294 GABBR2O75899 941 aa15.13■□□□□ 0.01
SMARCE1-219ENST00000583294 AMER1Q5JTC6 1135 aaPredicted RBP15.11■□□□□ 0.01
SMARCE1-219ENST00000583294 NPM1P06748 294 aaKnown RBP eCLIP15.06■□□□□ 0
SMARCE1-219ENST00000583294 ZRANB1Q9UGI0 708 aa15.06■□□□□ 0
SMARCE1-219ENST00000583294 MIER1Q8N108 512 aa15.05■□□□□ -0
SMARCE1-219ENST00000583294 VASPP50552 380 aaPredicted RBP15.04■□□□□ -0
SMARCE1-219ENST00000583294 ZNF579Q8NAF0 562 aaKnown RBP14.97□□□□□ -0.01
SMARCE1-219ENST00000583294 PLCD3Q8N3E9 789 aa14.94□□□□□ -0.02
SMARCE1-219ENST00000583294 PAK3O75914 559 aaPredicted RBP14.93□□□□□ -0.02
SMARCE1-219ENST00000583294 PLEKHG5O94827 1062 aa14.93□□□□□ -0.02
SMARCE1-219ENST00000583294 PHF12Q96QT6 1004 aa14.89□□□□□ -0.03
SMARCE1-219ENST00000583294 CLCN6P51797 869 aa14.88□□□□□ -0.03
SMARCE1-219ENST00000583294 IFNLR1Q8IU57 520 aaPredicted RBP14.88□□□□□ -0.03
SMARCE1-219ENST00000583294 TSPYL2Q9H2G4 693 aaPredicted RBP14.87□□□□□ -0.03
SMARCE1-219ENST00000583294 POTEIP0CG38 1075 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 184.8 ms