RNA–Protein interactions for RNA: ENST00000583289.5

PTPRM-215, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 5

Gene PTPRM, Length 792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-215ENST00000583289 AEBP2Q6ZN18 517 aaPredicted RBP22.65■■□□□ 1.22
PTPRM-215ENST00000583289 CHIC1Q5VXU3 224 aa21.79■■□□□ 1.08
PTPRM-215ENST00000583289 SENP3Q9H4L4 574 aaPredicted RBP19.38■□□□□ 0.69
PTPRM-215ENST00000583289 PHF23Q9BUL5 403 aaPredicted RBP19.1■□□□□ 0.65
PTPRM-215ENST00000583289 FOXD1Q16676 465 aa17.97■□□□□ 0.47
PTPRM-215ENST00000583289 PLPPR3Q6T4P5 718 aa17.55■□□□□ 0.4
PTPRM-215ENST00000583289 PPP6R1Q9UPN7 881 aa16.93■□□□□ 0.3
PTPRM-215ENST00000583289 ADRA2BP18089 450 aa16.91■□□□□ 0.3
PTPRM-215ENST00000583289 PIAS4Q8N2W9 510 aaPredicted RBP16.89■□□□□ 0.29
PTPRM-215ENST00000583289 MSH5O43196 834 aa16.82■□□□□ 0.28
PTPRM-215ENST00000583289 POTEDQ86YR6 584 aa15.95■□□□□ 0.14
PTPRM-215ENST00000583289 SCAF1Q9H7N4 1312 aaKnown RBP15.6■□□□□ 0.09
PTPRM-215ENST00000583289 MAPK8IP2Q13387 824 aaPredicted RBP15.44■□□□□ 0.06
PTPRM-215ENST00000583289 DMRT2Q9Y5R5 561 aa15.39■□□□□ 0.05
PTPRM-215ENST00000583289 PPP4R3CPQ6ZMV5 832 aa15.37■□□□□ 0.05
PTPRM-215ENST00000583289 CNKSR2Q8WXI2 1034 aa15.08■□□□□ 0
PTPRM-215ENST00000583289 NCBP3Q53F19 620 aaKnown RBP14.92□□□□□ -0.02
PTPRM-215ENST00000583289 HOXD11P31277 338 aaPredicted RBP14.91□□□□□ -0.02
PTPRM-215ENST00000583289 RNF216Q9NWF9 866 aaPredicted RBP14.88□□□□□ -0.03
PTPRM-215ENST00000583289 DCAF8L1A6NGE4 600 aa14.73□□□□□ -0.05
PTPRM-215ENST00000583289 NPM3O75607 178 aaKnown RBP14.63□□□□□ -0.07
PTPRM-215ENST00000583289 KCNA4P22459 653 aa14.53□□□□□ -0.08
PTPRM-215ENST00000583289 DNAJC5BQ9UF47 199 aa14.41□□□□□ -0.1
PTPRM-215ENST00000583289 RNF39Q9H2S5 420 aa14.33□□□□□ -0.12
PTPRM-215ENST00000583289 CACNB1Q02641 598 aaPredicted RBP14.25□□□□□ -0.13
PTPRM-215ENST00000583289 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.21□□□□□ -0.139e-8■□□□□ 8.3
PTPRM-215ENST00000583289 C1QBPQ07021 282 aaKnown RBP14.16□□□□□ -0.14
PTPRM-215ENST00000583289 U3KPZ7 1027 aaPredicted RBP13.91□□□□□ -0.18
PTPRM-215ENST00000583289 SLC4A2P04920 1241 aa13.89□□□□□ -0.19
PTPRM-215ENST00000583289 SLC4A1APQ9BWU0 796 aaKnown RBP13.81□□□□□ -0.2
PTPRM-215ENST00000583289 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.69□□□□□ -0.22
PTPRM-215ENST00000583289 HNRNPUL2Q1KMD3 747 aaKnown RBP13.69□□□□□ -0.22
PTPRM-215ENST00000583289 APLP2Q06481 763 aa13.68□□□□□ -0.22
PTPRM-215ENST00000583289 CAPN15O75808 1086 aa13.63□□□□□ -0.23
PTPRM-215ENST00000583289 SPINK5Q9NQ38 1064 aaPredicted RBP13.61□□□□□ -0.23
PTPRM-215ENST00000583289 SAMD1Q6SPF0 538 aaPredicted RBP13.6□□□□□ -0.23
PTPRM-215ENST00000583289 MYCNP04198 464 aaPredicted RBP13.58□□□□□ -0.24
PTPRM-215ENST00000583289 FOXD4L1Q9NU39 408 aa13.54□□□□□ -0.24
PTPRM-215ENST00000583289 ZNF219Q9P2Y4 722 aaPredicted RBP13.5□□□□□ -0.25
PTPRM-215ENST00000583289 DSG3P32926 999 aa13.48□□□□□ -0.25
PTPRM-215ENST00000583289 TRHP20396 242 aaPredicted RBP13.45□□□□□ -0.26
PTPRM-215ENST00000583289 ZBTB22O15209 634 aa13.34□□□□□ -0.27
PTPRM-215ENST00000583289 ABCB7O75027 752 aa13.3□□□□□ -0.28
PTPRM-215ENST00000583289 ATXN8OSP0DMR3 200 aa13.15□□□□□ -0.3
PTPRM-215ENST00000583289 ATF5Q9Y2D1 282 aaPredicted RBP13.15□□□□□ -0.3
PTPRM-215ENST00000583289 POLA2Q14181 598 aa13.14□□□□□ -0.31
PTPRM-215ENST00000583289 ZBTB12Q9Y330 459 aaPredicted RBP12.99□□□□□ -0.33
PTPRM-215ENST00000583289 CSRNP3Q8WYN3 585 aa12.94□□□□□ -0.34
PTPRM-215ENST00000583289 RBM42Q9BTD8 480 aaKnown RBP12.94□□□□□ -0.34
PTPRM-215ENST00000583289 EHMT2Q96KQ7 1210 aa12.9□□□□□ -0.34
PTPRM-215ENST00000583289 FBLN2P98095 1184 aa12.73□□□□□ -0.37
PTPRM-215ENST00000583289 OSCARQ8IYS5 282 aa12.71□□□□□ -0.37
PTPRM-215ENST00000583289 AKT1S1Q96B36 256 aa12.65□□□□□ -0.38
PTPRM-215ENST00000583289 MKRN4PQ13434 485 aaPredicted RBP12.57□□□□□ -0.4
PTPRM-215ENST00000583289 SPDYE2BA6NHP3 402 aa12.56□□□□□ -0.4
PTPRM-215ENST00000583289 SPDYE6P0CI01 402 aa12.56□□□□□ -0.4
PTPRM-215ENST00000583289 SPDYE2Q495Y8 402 aa12.56□□□□□ -0.4
PTPRM-215ENST00000583289 POTEHQ6S545 545 aa12.56□□□□□ -0.4
PTPRM-215ENST00000583289 CHRDL2Q6WN34 429 aa12.51□□□□□ -0.41
PTPRM-215ENST00000583289 REM2Q8IYK8 340 aaPredicted RBP12.49□□□□□ -0.41
PTPRM-215ENST00000583289 ZNF692Q9BU19 519 aaPredicted RBP12.42□□□□□ -0.42
PTPRM-215ENST00000583289 SSUH2Q9Y2M2 353 aa12.39□□□□□ -0.43
PTPRM-215ENST00000583289 PITPNM1O00562 1244 aa12.36□□□□□ -0.43
PTPRM-215ENST00000583289 SPDYE1Q8NFV5 336 aaPredicted RBP12.29□□□□□ -0.44
PTPRM-215ENST00000583289 PIP4P2Q8N4L2 257 aa12.24□□□□□ -0.45
PTPRM-215ENST00000583289 PABPN1Q86U42 306 aaKnown RBP eCLIP12.23□□□□□ -0.45
PTPRM-215ENST00000583289 FXR2P51116 673 aaKnown RBP eCLIP12.21□□□□□ -0.45
PTPRM-215ENST00000583289 CLEC11AQ9Y240 323 aa12.21□□□□□ -0.45
PTPRM-215ENST00000583289 SPDYE4A6NLX3 237 aa12.15□□□□□ -0.46
PTPRM-215ENST00000583289 PRR29P0C7W0 189 aa12.07□□□□□ -0.48
PTPRM-215ENST00000583289 PRKAR2AP13861 404 aaKnown RBP12.05□□□□□ -0.48
PTPRM-215ENST00000583289 STAG3Q9UJ98 1225 aa12.01□□□□□ -0.49
PTPRM-215ENST00000583289 HAX1O00165 279 aa11.96□□□□□ -0.49
PTPRM-215ENST00000583289 CHADLQ6NUI6 762 aa11.92□□□□□ -0.5
PTPRM-215ENST00000583289 SP7Q8TDD2 431 aaPredicted RBP11.9□□□□□ -0.5
PTPRM-215ENST00000583289 PROM2Q8N271 834 aa11.89□□□□□ -0.51
PTPRM-215ENST00000583289 C19orf67A6NJJ6 358 aa11.82□□□□□ -0.52
PTPRM-215ENST00000583289 FARP1Q9Y4F1 1045 aaPredicted RBP11.81□□□□□ -0.52
PTPRM-215ENST00000583289 CREBZFQ9NS37 354 aa11.78□□□□□ -0.52
PTPRM-215ENST00000583289 EVX2Q03828 476 aa11.76□□□□□ -0.53
PTPRM-215ENST00000583289 FKBP8Q14318 412 aa11.75□□□□□ -0.53
PTPRM-215ENST00000583289 CD44P16070 742 aaKnown RBP11.69□□□□□ -0.54
PTPRM-215ENST00000583289 NPM1P06748 294 aaKnown RBP eCLIP11.65□□□□□ -0.54
PTPRM-215ENST00000583289 PLEKHG5O94827 1062 aa11.61□□□□□ -0.55
PTPRM-215ENST00000583289 MNX1P50219 401 aaPredicted RBP11.6□□□□□ -0.55
PTPRM-215ENST00000583289 CLCN6P51797 869 aa11.58□□□□□ -0.56
PTPRM-215ENST00000583289 GABBR2O75899 941 aa11.57□□□□□ -0.56
PTPRM-215ENST00000583289 PAK3O75914 559 aaPredicted RBP11.57□□□□□ -0.56
PTPRM-215ENST00000583289 MIER1Q8N108 512 aa11.56□□□□□ -0.56
PTPRM-215ENST00000583289 ZRANB1Q9UGI0 708 aa11.55□□□□□ -0.56
PTPRM-215ENST00000583289 ZNF579Q8NAF0 562 aaKnown RBP11.53□□□□□ -0.56
PTPRM-215ENST00000583289 FBXO3Q9UK99 471 aa11.52□□□□□ -0.57
PTPRM-215ENST00000583289 PLCD3Q8N3E9 789 aa11.51□□□□□ -0.57
PTPRM-215ENST00000583289 ZBTB47Q9UFB7 747 aaPredicted RBP11.48□□□□□ -0.57
PTPRM-215ENST00000583289 PHF12Q96QT6 1004 aa11.38□□□□□ -0.59
PTPRM-215ENST00000583289 TSPYL2Q9H2G4 693 aaPredicted RBP11.37□□□□□ -0.59
PTPRM-215ENST00000583289 DCBLD2Q96PD2 775 aa11.35□□□□□ -0.59
PTPRM-215ENST00000583289 GALR2O43603 387 aaPredicted RBP11.33□□□□□ -0.6
PTPRM-215ENST00000583289 RASEFQ8IZ41 740 aa11.33□□□□□ -0.6
PTPRM-215ENST00000583289 CCDC61Q9Y6R9 512 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms