RNA–Protein interactions for RNA: ENST00000581394.1

TTC39C-207, Transcript of tetratricopeptide repeat domain 39C, humanhuman

TSL 3

Gene TTC39C, Length 510 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39C-207ENST00000581394 AEBP2Q6ZN18 517 aaPredicted RBP29.04■■■□□ 2.24
TTC39C-207ENST00000581394 CHIC1Q5VXU3 224 aa27.57■■■□□ 2
TTC39C-207ENST00000581394 SENP3Q9H4L4 574 aaPredicted RBP24.81■■□□□ 1.56
TTC39C-207ENST00000581394 PHF23Q9BUL5 403 aaPredicted RBP24.45■■□□□ 1.5
TTC39C-207ENST00000581394 FOXD1Q16676 465 aa23.1■■□□□ 1.29
TTC39C-207ENST00000581394 PLPPR3Q6T4P5 718 aa22.01■■□□□ 1.11
TTC39C-207ENST00000581394 MSH5O43196 834 aa21.66■■□□□ 1.06
TTC39C-207ENST00000581394 PIAS4Q8N2W9 510 aaPredicted RBP21.57■■□□□ 1.04
TTC39C-207ENST00000581394 PPP6R1Q9UPN7 881 aa21.55■■□□□ 1.04
TTC39C-207ENST00000581394 ADRA2BP18089 450 aa21.47■■□□□ 1.03
TTC39C-207ENST00000581394 POTEDQ86YR6 584 aa21.18■□□□□ 0.98
TTC39C-207ENST00000581394 MAPK8IP2Q13387 824 aaPredicted RBP19.72■□□□□ 0.75
TTC39C-207ENST00000581394 SCAF1Q9H7N4 1312 aaKnown RBP19.69■□□□□ 0.74
TTC39C-207ENST00000581394 DMRT2Q9Y5R5 561 aa19.67■□□□□ 0.74
TTC39C-207ENST00000581394 PPP4R3CPQ6ZMV5 832 aa19.27■□□□□ 0.68
TTC39C-207ENST00000581394 HOXD11P31277 338 aaPredicted RBP18.94■□□□□ 0.62
TTC39C-207ENST00000581394 CNKSR2Q8WXI2 1034 aa18.94■□□□□ 0.62
TTC39C-207ENST00000581394 RNF216Q9NWF9 866 aaPredicted RBP18.79■□□□□ 0.6
TTC39C-207ENST00000581394 DCAF8L1A6NGE4 600 aa18.78■□□□□ 0.6
TTC39C-207ENST00000581394 CACNB1Q02641 598 aaPredicted RBP18.57■□□□□ 0.56
TTC39C-207ENST00000581394 NCBP3Q53F19 620 aaKnown RBP18.54■□□□□ 0.56
TTC39C-207ENST00000581394 RNF39Q9H2S5 420 aa18.47■□□□□ 0.55
TTC39C-207ENST00000581394 DNAJC5BQ9UF47 199 aa18.35■□□□□ 0.53
TTC39C-207ENST00000581394 NPM3O75607 178 aaKnown RBP18.25■□□□□ 0.51
TTC39C-207ENST00000581394 C1QBPQ07021 282 aaKnown RBP18.21■□□□□ 0.51
TTC39C-207ENST00000581394 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18■□□□□ 0.47
TTC39C-207ENST00000581394 KCNA4P22459 653 aa17.85■□□□□ 0.45
TTC39C-207ENST00000581394 U3KPZ7 1027 aaPredicted RBP17.63■□□□□ 0.41
TTC39C-207ENST00000581394 SLC4A2P04920 1241 aa17.44■□□□□ 0.38
TTC39C-207ENST00000581394 SPINK5Q9NQ38 1064 aaPredicted RBP17.37■□□□□ 0.37
TTC39C-207ENST00000581394 CAPN15O75808 1086 aa17.34■□□□□ 0.37
TTC39C-207ENST00000581394 DSG3P32926 999 aa17.29■□□□□ 0.36
TTC39C-207ENST00000581394 APLP2Q06481 763 aa17.18■□□□□ 0.34
TTC39C-207ENST00000581394 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.15■□□□□ 0.34
TTC39C-207ENST00000581394 HNRNPUL2Q1KMD3 747 aaKnown RBP17.15■□□□□ 0.34
TTC39C-207ENST00000581394 ZNF219Q9P2Y4 722 aaPredicted RBP17.06■□□□□ 0.32
TTC39C-207ENST00000581394 TRHP20396 242 aaPredicted RBP17.04■□□□□ 0.32
TTC39C-207ENST00000581394 SAMD1Q6SPF0 538 aaPredicted RBP17.04■□□□□ 0.32
TTC39C-207ENST00000581394 ABCB7O75027 752 aa16.91■□□□□ 0.3
TTC39C-207ENST00000581394 MYCNP04198 464 aaPredicted RBP16.91■□□□□ 0.3
TTC39C-207ENST00000581394 SLC4A1APQ9BWU0 796 aaKnown RBP16.84■□□□□ 0.29
TTC39C-207ENST00000581394 FOXD4L1Q9NU39 408 aa16.7■□□□□ 0.26
TTC39C-207ENST00000581394 POLA2Q14181 598 aa16.59■□□□□ 0.25
TTC39C-207ENST00000581394 POTEHQ6S545 545 aa16.59■□□□□ 0.25
TTC39C-207ENST00000581394 RBM42Q9BTD8 480 aaKnown RBP16.51■□□□□ 0.23
TTC39C-207ENST00000581394 ATF5Q9Y2D1 282 aaPredicted RBP16.47■□□□□ 0.23
TTC39C-207ENST00000581394 ZBTB22O15209 634 aa16.4■□□□□ 0.22
TTC39C-207ENST00000581394 ZBTB12Q9Y330 459 aaPredicted RBP16.3■□□□□ 0.2
TTC39C-207ENST00000581394 ATXN8OSP0DMR3 200 aa16.23■□□□□ 0.19
TTC39C-207ENST00000581394 CHRDL2Q6WN34 429 aa16.13■□□□□ 0.17
TTC39C-207ENST00000581394 AKT1S1Q96B36 256 aa16.12■□□□□ 0.17
TTC39C-207ENST00000581394 OSCARQ8IYS5 282 aa16.06■□□□□ 0.16
TTC39C-207ENST00000581394 REM2Q8IYK8 340 aaPredicted RBP15.95■□□□□ 0.14
TTC39C-207ENST00000581394 FBLN2P98095 1184 aa15.86■□□□□ 0.13
TTC39C-207ENST00000581394 SPDYE2BA6NHP3 402 aa15.79■□□□□ 0.12
TTC39C-207ENST00000581394 SPDYE6P0CI01 402 aa15.79■□□□□ 0.12
TTC39C-207ENST00000581394 SPDYE2Q495Y8 402 aa15.79■□□□□ 0.12
TTC39C-207ENST00000581394 PITPNM1O00562 1244 aa15.77■□□□□ 0.12
TTC39C-207ENST00000581394 PIP4P2Q8N4L2 257 aa15.74■□□□□ 0.11
TTC39C-207ENST00000581394 MKRN4PQ13434 485 aaPredicted RBP15.73■□□□□ 0.11
TTC39C-207ENST00000581394 FXR2P51116 673 aaKnown RBP eCLIP15.67■□□□□ 0.1
TTC39C-207ENST00000581394 CSRNP3Q8WYN3 585 aa15.62■□□□□ 0.09
TTC39C-207ENST00000581394 SSUH2Q9Y2M2 353 aa15.57■□□□□ 0.08
TTC39C-207ENST00000581394 ZNF692Q9BU19 519 aaPredicted RBP15.55■□□□□ 0.08
TTC39C-207ENST00000581394 SP7Q8TDD2 431 aaPredicted RBP15.54■□□□□ 0.08
TTC39C-207ENST00000581394 SPDYE1Q8NFV5 336 aaPredicted RBP15.51■□□□□ 0.07
TTC39C-207ENST00000581394 HAX1O00165 279 aa15.44■□□□□ 0.06
TTC39C-207ENST00000581394 CLEC11AQ9Y240 323 aa15.44■□□□□ 0.06
TTC39C-207ENST00000581394 PRKAR2AP13861 404 aaKnown RBP15.36■□□□□ 0.05
TTC39C-207ENST00000581394 EHMT2Q96KQ7 1210 aa15.34■□□□□ 0.05
TTC39C-207ENST00000581394 PABPN1Q86U42 306 aaKnown RBP eCLIP15.32■□□□□ 0.04
TTC39C-207ENST00000581394 EVX2Q03828 476 aa15.25■□□□□ 0.03
TTC39C-207ENST00000581394 PRR29P0C7W0 189 aa15.2■□□□□ 0.02
TTC39C-207ENST00000581394 C19orf67A6NJJ6 358 aa15.17■□□□□ 0.02
TTC39C-207ENST00000581394 CHADLQ6NUI6 762 aa15.15■□□□□ 0.02
TTC39C-207ENST00000581394 SPDYE4A6NLX3 237 aa14.96□□□□□ -0.01
TTC39C-207ENST00000581394 FARP1Q9Y4F1 1045 aaPredicted RBP14.95□□□□□ -0.02
TTC39C-207ENST00000581394 STAG3Q9UJ98 1225 aa14.94□□□□□ -0.02
TTC39C-207ENST00000581394 GABBR2O75899 941 aa14.93□□□□□ -0.02
TTC39C-207ENST00000581394 CD44P16070 742 aaKnown RBP14.86□□□□□ -0.03
TTC39C-207ENST00000581394 CREBZFQ9NS37 354 aa14.83□□□□□ -0.04
TTC39C-207ENST00000581394 CLCN6P51797 869 aa14.75□□□□□ -0.05
TTC39C-207ENST00000581394 ZNF579Q8NAF0 562 aaKnown RBP14.67□□□□□ -0.06
TTC39C-207ENST00000581394 PROM2Q8N271 834 aa14.65□□□□□ -0.06
TTC39C-207ENST00000581394 ZRANB1Q9UGI0 708 aa14.64□□□□□ -0.07
TTC39C-207ENST00000581394 POTEIP0CG38 1075 aa14.61□□□□□ -0.07
TTC39C-207ENST00000581394 MNX1P50219 401 aaPredicted RBP14.58□□□□□ -0.08
TTC39C-207ENST00000581394 NPM1P06748 294 aaKnown RBP eCLIP14.57□□□□□ -0.08
TTC39C-207ENST00000581394 LHX8Q68G74 356 aa14.56□□□□□ -0.08
TTC39C-207ENST00000581394 PAK3O75914 559 aaPredicted RBP14.53□□□□□ -0.08
TTC39C-207ENST00000581394 DCBLD2Q96PD2 775 aa14.5□□□□□ -0.09
TTC39C-207ENST00000581394 GALR2O43603 387 aaPredicted RBP14.46□□□□□ -0.09
TTC39C-207ENST00000581394 PHF12Q96QT6 1004 aa14.43□□□□□ -0.1
TTC39C-207ENST00000581394 PLEKHG5O94827 1062 aa14.28□□□□□ -0.12
TTC39C-207ENST00000581394 MIER1Q8N108 512 aa14.26□□□□□ -0.13
TTC39C-207ENST00000581394 TSPYL2Q9H2G4 693 aaPredicted RBP14.26□□□□□ -0.13
TTC39C-207ENST00000581394 MS4A3Q96HJ5 214 aa14.25□□□□□ -0.13
TTC39C-207ENST00000581394 CCDC61Q9Y6R9 512 aa14.24□□□□□ -0.13
TTC39C-207ENST00000581394 ASTLQ6HA08 431 aaPredicted RBP14.19□□□□□ -0.14
TTC39C-207ENST00000581394 PELP1Q8IZL8 1130 aaKnown RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms