RNA–Protein interactions for RNA: ENST00000581113.6

NF1-220, Transcript of neurofibromin 1, humanhuman

TSL 5

Gene NF1, Length 1,464 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NF1-220ENST00000581113 AEBP2Q6ZN18 517 aaPredicted RBP22.9■■□□□ 1.26
NF1-220ENST00000581113 CHIC1Q5VXU3 224 aa22.47■■□□□ 1.19
NF1-220ENST00000581113 PHF23Q9BUL5 403 aaPredicted RBP19.78■□□□□ 0.76
NF1-220ENST00000581113 SENP3Q9H4L4 574 aaPredicted RBP19.41■□□□□ 0.7
NF1-220ENST00000581113 PLPPR3Q6T4P5 718 aa18.32■□□□□ 0.52
NF1-220ENST00000581113 FOXD1Q16676 465 aa18.01■□□□□ 0.47
NF1-220ENST00000581113 ADRA2BP18089 450 aa17.44■□□□□ 0.38
NF1-220ENST00000581113 PPP6R1Q9UPN7 881 aa17.43■□□□□ 0.38
NF1-220ENST00000581113 PIAS4Q8N2W9 510 aaPredicted RBP17.05■□□□□ 0.32
NF1-220ENST00000581113 MSH5O43196 834 aa16.56■□□□□ 0.24
NF1-220ENST00000581113 PPP4R3CPQ6ZMV5 832 aa16.16■□□□□ 0.18
NF1-220ENST00000581113 SCAF1Q9H7N4 1312 aaKnown RBP15.94■□□□□ 0.14
NF1-220ENST00000581113 KCNA4P22459 653 aa15.93■□□□□ 0.14
NF1-220ENST00000581113 MAPK8IP2Q13387 824 aaPredicted RBP15.78■□□□□ 0.12
NF1-220ENST00000581113 NCBP3Q53F19 620 aaKnown RBP15.77■□□□□ 0.11
NF1-220ENST00000581113 CNKSR2Q8WXI2 1034 aa15.67■□□□□ 0.1
NF1-220ENST00000581113 NPM3O75607 178 aaKnown RBP15.53■□□□□ 0.08
NF1-220ENST00000581113 DMRT2Q9Y5R5 561 aa15.51■□□□□ 0.07
NF1-220ENST00000581113 RNF216Q9NWF9 866 aaPredicted RBP15.33■□□□□ 0.04
NF1-220ENST00000581113 HOXD11P31277 338 aaPredicted RBP15.22■□□□□ 0.03
NF1-220ENST00000581113 SLC4A1APQ9BWU0 796 aaKnown RBP15.19■□□□□ 0.02
NF1-220ENST00000581113 DNAJC5BQ9UF47 199 aa14.98□□□□□ -0.01
NF1-220ENST00000581113 EHMT2Q96KQ7 1210 aa14.94□□□□□ -0.02
NF1-220ENST00000581113 DCAF8L1A6NGE4 600 aa14.91□□□□□ -0.02
NF1-220ENST00000581113 POTEDQ86YR6 584 aa14.88□□□□□ -0.03
NF1-220ENST00000581113 ZBTB22O15209 634 aa14.65□□□□□ -0.06
NF1-220ENST00000581113 CSRNP3Q8WYN3 585 aa14.65□□□□□ -0.06
NF1-220ENST00000581113 SLC4A2P04920 1241 aa14.63□□□□□ -0.07
NF1-220ENST00000581113 FOXD4L1Q9NU39 408 aa14.61□□□□□ -0.07
NF1-220ENST00000581113 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.57□□□□□ -0.08
NF1-220ENST00000581113 MYCNP04198 464 aaPredicted RBP14.35□□□□□ -0.11
NF1-220ENST00000581113 U3KPZ7 1027 aaPredicted RBP14.31□□□□□ -0.12
NF1-220ENST00000581113 RNF39Q9H2S5 420 aa14.19□□□□□ -0.14
NF1-220ENST00000581113 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.18□□□□□ -0.14
NF1-220ENST00000581113 HNRNPUL2Q1KMD3 747 aaKnown RBP14.18□□□□□ -0.14
NF1-220ENST00000581113 SAMD1Q6SPF0 538 aaPredicted RBP14.13□□□□□ -0.15
NF1-220ENST00000581113 ATXN8OSP0DMR3 200 aa14.06□□□□□ -0.16
NF1-220ENST00000581113 C1QBPQ07021 282 aaKnown RBP14.03□□□□□ -0.16
NF1-220ENST00000581113 APLP2Q06481 763 aa13.99□□□□□ -0.17
NF1-220ENST00000581113 ATF5Q9Y2D1 282 aaPredicted RBP13.97□□□□□ -0.17
NF1-220ENST00000581113 SPINK5Q9NQ38 1064 aaPredicted RBP13.89□□□□□ -0.19
NF1-220ENST00000581113 CAPN15O75808 1086 aa13.86□□□□□ -0.19
NF1-220ENST00000581113 TRHP20396 242 aaPredicted RBP13.83□□□□□ -0.2
NF1-220ENST00000581113 ZNF219Q9P2Y4 722 aaPredicted RBP13.79□□□□□ -0.2
NF1-220ENST00000581113 CACNB1Q02641 598 aaPredicted RBP13.78□□□□□ -0.2
NF1-220ENST00000581113 POLA2Q14181 598 aa13.61□□□□□ -0.23
NF1-220ENST00000581113 ABCB7O75027 752 aa13.61□□□□□ -0.23
NF1-220ENST00000581113 DSG3P32926 999 aa13.55□□□□□ -0.24
NF1-220ENST00000581113 FBLN2P98095 1184 aa13.39□□□□□ -0.27
NF1-220ENST00000581113 ZBTB12Q9Y330 459 aaPredicted RBP13.37□□□□□ -0.27
NF1-220ENST00000581113 MKRN4PQ13434 485 aaPredicted RBP13.36□□□□□ -0.27
NF1-220ENST00000581113 FKBP8Q14318 412 aa13.28□□□□□ -0.28
NF1-220ENST00000581113 OSCARQ8IYS5 282 aa13.15□□□□□ -0.3
NF1-220ENST00000581113 SPDYE4A6NLX3 237 aa13.14□□□□□ -0.31
NF1-220ENST00000581113 SPDYE2BA6NHP3 402 aa13.01□□□□□ -0.33
NF1-220ENST00000581113 SPDYE6P0CI01 402 aa13.01□□□□□ -0.33
NF1-220ENST00000581113 SPDYE2Q495Y8 402 aa13.01□□□□□ -0.33
NF1-220ENST00000581113 ZNF692Q9BU19 519 aaPredicted RBP13.01□□□□□ -0.33
NF1-220ENST00000581113 RBM42Q9BTD8 480 aaKnown RBP12.91□□□□□ -0.34
NF1-220ENST00000581113 SSUH2Q9Y2M2 353 aa12.91□□□□□ -0.34
NF1-220ENST00000581113 PROM2Q8N271 834 aa12.87□□□□□ -0.35
NF1-220ENST00000581113 PABPN1Q86U42 306 aaKnown RBP eCLIP12.85□□□□□ -0.35
NF1-220ENST00000581113 AKT1S1Q96B36 256 aa12.78□□□□□ -0.36
NF1-220ENST00000581113 FBXO3Q9UK99 471 aa12.76□□□□□ -0.37
NF1-220ENST00000581113 REM2Q8IYK8 340 aaPredicted RBP12.67□□□□□ -0.38
NF1-220ENST00000581113 STAG3Q9UJ98 1225 aa12.62□□□□□ -0.39
NF1-220ENST00000581113 SPDYE1Q8NFV5 336 aaPredicted RBP12.61□□□□□ -0.39
NF1-220ENST00000581113 CLEC11AQ9Y240 323 aa12.59□□□□□ -0.39
NF1-220ENST00000581113 VASPP50552 380 aaPredicted RBP12.58□□□□□ -0.4
NF1-220ENST00000581113 PITPNM1O00562 1244 aa12.53□□□□□ -0.4
NF1-220ENST00000581113 PRR29P0C7W0 189 aa12.48□□□□□ -0.41
NF1-220ENST00000581113 PLCD3Q8N3E9 789 aa12.46□□□□□ -0.41
NF1-220ENST00000581113 MIER1Q8N108 512 aa12.46□□□□□ -0.42
NF1-220ENST00000581113 IFNLR1Q8IU57 520 aaPredicted RBP12.41□□□□□ -0.42
NF1-220ENST00000581113 PLEKHG5O94827 1062 aa12.4□□□□□ -0.43
NF1-220ENST00000581113 KLHL34Q8N239 644 aa12.37□□□□□ -0.43
NF1-220ENST00000581113 CHRDL2Q6WN34 429 aa12.34□□□□□ -0.43
NF1-220ENST00000581113 CREBZFQ9NS37 354 aa12.32□□□□□ -0.44
NF1-220ENST00000581113 ZBTB47Q9UFB7 747 aaPredicted RBP12.29□□□□□ -0.44
NF1-220ENST00000581113 AMER1Q5JTC6 1135 aaPredicted RBP12.28□□□□□ -0.44
NF1-220ENST00000581113 RTN4Q9NQC3 1192 aaKnown RBP12.27□□□□□ -0.45
NF1-220ENST00000581113 CHADLQ6NUI6 762 aa12.26□□□□□ -0.45
NF1-220ENST00000581113 SPOCK2Q92563 424 aa12.25□□□□□ -0.45
NF1-220ENST00000581113 FXR2P51116 673 aaKnown RBP eCLIP12.24□□□□□ -0.451e-8■■■■□ 19.9
NF1-220ENST00000581113 PRKAR2AP13861 404 aaKnown RBP12.22□□□□□ -0.45
NF1-220ENST00000581113 PIP4P2Q8N4L2 257 aa12.21□□□□□ -0.45
NF1-220ENST00000581113 MNX1P50219 401 aaPredicted RBP12.19□□□□□ -0.46
NF1-220ENST00000581113 FARP1Q9Y4F1 1045 aaPredicted RBP12.14□□□□□ -0.47
NF1-220ENST00000581113 NPM1P06748 294 aaKnown RBP eCLIP12.13□□□□□ -0.47
NF1-220ENST00000581113 NUBP1P53384 320 aa12.08□□□□□ -0.47
NF1-220ENST00000581113 CIZ1Q9ULV3 898 aaPredicted RBP12.08□□□□□ -0.48
NF1-220ENST00000581113 PKD2Q13563 968 aa12.03□□□□□ -0.48
NF1-220ENST00000581113 RASEFQ8IZ41 740 aa12.03□□□□□ -0.48
NF1-220ENST00000581113 DCAF8Q5TAQ9 597 aa12.02□□□□□ -0.48
NF1-220ENST00000581113 FAM212AQ96EL1 285 aa12.02□□□□□ -0.48
NF1-220ENST00000581113 GSE1Q14687 1217 aa12□□□□□ -0.49
NF1-220ENST00000581113 ECM2O94769 699 aaPredicted RBP11.97□□□□□ -0.49
NF1-220ENST00000581113 TSPYL2Q9H2G4 693 aaPredicted RBP11.96□□□□□ -0.49
NF1-220ENST00000581113 PAK3O75914 559 aaPredicted RBP11.91□□□□□ -0.5
NF1-220ENST00000581113 TRIM41Q8WV44 630 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 226.6 ms