RNA–Protein interactions for RNA: ENST00000578571.5

PTPRM-207, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 5

Gene PTPRM, Length 1,106 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-207ENST00000578571 AEBP2Q6ZN18 517 aaPredicted RBP24.28■■□□□ 1.48
PTPRM-207ENST00000578571 CHIC1Q5VXU3 224 aa23.76■■□□□ 1.39
PTPRM-207ENST00000578571 PHF23Q9BUL5 403 aaPredicted RBP20.94■□□□□ 0.94
PTPRM-207ENST00000578571 SENP3Q9H4L4 574 aaPredicted RBP20.52■□□□□ 0.88
PTPRM-207ENST00000578571 PLPPR3Q6T4P5 718 aa19.3■□□□□ 0.68
PTPRM-207ENST00000578571 FOXD1Q16676 465 aa19.08■□□□□ 0.64
PTPRM-207ENST00000578571 PPP6R1Q9UPN7 881 aa18.45■□□□□ 0.54
PTPRM-207ENST00000578571 ADRA2BP18089 450 aa18.42■□□□□ 0.54
PTPRM-207ENST00000578571 PIAS4Q8N2W9 510 aaPredicted RBP17.98■□□□□ 0.47
PTPRM-207ENST00000578571 MSH5O43196 834 aa17.51■□□□□ 0.39
PTPRM-207ENST00000578571 PPP4R3CPQ6ZMV5 832 aa17.04■□□□□ 0.32
PTPRM-207ENST00000578571 SCAF1Q9H7N4 1312 aaKnown RBP16.77■□□□□ 0.28
PTPRM-207ENST00000578571 KCNA4P22459 653 aa16.76■□□□□ 0.27
PTPRM-207ENST00000578571 MAPK8IP2Q13387 824 aaPredicted RBP16.69■□□□□ 0.26
PTPRM-207ENST00000578571 POTEDQ86YR6 584 aa16.62■□□□□ 0.25
PTPRM-207ENST00000578571 NCBP3Q53F19 620 aaKnown RBP16.57■□□□□ 0.24
PTPRM-207ENST00000578571 CNKSR2Q8WXI2 1034 aa16.53■□□□□ 0.24
PTPRM-207ENST00000578571 DMRT2Q9Y5R5 561 aa16.42■□□□□ 0.22
PTPRM-207ENST00000578571 NPM3O75607 178 aaKnown RBP16.39■□□□□ 0.21
PTPRM-207ENST00000578571 RNF216Q9NWF9 866 aaPredicted RBP16.19■□□□□ 0.18
PTPRM-207ENST00000578571 HOXD11P31277 338 aaPredicted RBP16.13■□□□□ 0.17
PTPRM-207ENST00000578571 SLC4A1APQ9BWU0 796 aaKnown RBP15.95■□□□□ 0.14
PTPRM-207ENST00000578571 DNAJC5BQ9UF47 199 aa15.92■□□□□ 0.14
PTPRM-207ENST00000578571 DCAF8L1A6NGE4 600 aa15.65■□□□□ 0.1
PTPRM-207ENST00000578571 EHMT2Q96KQ7 1210 aa15.59■□□□□ 0.09
PTPRM-207ENST00000578571 SLC4A2P04920 1241 aa15.48■□□□□ 0.07
PTPRM-207ENST00000578571 ZBTB22O15209 634 aa15.46■□□□□ 0.07
PTPRM-207ENST00000578571 CSRNP3Q8WYN3 585 aa15.41■□□□□ 0.06
PTPRM-207ENST00000578571 FOXD4L1Q9NU39 408 aa15.37■□□□□ 0.05
PTPRM-207ENST00000578571 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.31■□□□□ 0.049e-8■□□□□ 8.3
PTPRM-207ENST00000578571 U3KPZ7 1027 aaPredicted RBP15.13■□□□□ 0.01
PTPRM-207ENST00000578571 MYCNP04198 464 aaPredicted RBP15.11■□□□□ 0.01
PTPRM-207ENST00000578571 RNF39Q9H2S5 420 aa15.05■□□□□ -0
PTPRM-207ENST00000578571 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.89□□□□□ -0.03
PTPRM-207ENST00000578571 HNRNPUL2Q1KMD3 747 aaKnown RBP14.89□□□□□ -0.03
PTPRM-207ENST00000578571 SAMD1Q6SPF0 538 aaPredicted RBP14.87□□□□□ -0.03
PTPRM-207ENST00000578571 C1QBPQ07021 282 aaKnown RBP14.84□□□□□ -0.03
PTPRM-207ENST00000578571 ATXN8OSP0DMR3 200 aa14.82□□□□□ -0.04
PTPRM-207ENST00000578571 ATF5Q9Y2D1 282 aaPredicted RBP14.76□□□□□ -0.05
PTPRM-207ENST00000578571 APLP2Q06481 763 aa14.7□□□□□ -0.06
PTPRM-207ENST00000578571 SPINK5Q9NQ38 1064 aaPredicted RBP14.68□□□□□ -0.06
PTPRM-207ENST00000578571 CAPN15O75808 1086 aa14.57□□□□□ -0.08
PTPRM-207ENST00000578571 CACNB1Q02641 598 aaPredicted RBP14.55□□□□□ -0.08
PTPRM-207ENST00000578571 TRHP20396 242 aaPredicted RBP14.53□□□□□ -0.08
PTPRM-207ENST00000578571 ZNF219Q9P2Y4 722 aaPredicted RBP14.52□□□□□ -0.09
PTPRM-207ENST00000578571 DSG3P32926 999 aa14.35□□□□□ -0.11
PTPRM-207ENST00000578571 ABCB7O75027 752 aa14.33□□□□□ -0.12
PTPRM-207ENST00000578571 POLA2Q14181 598 aa14.33□□□□□ -0.12
PTPRM-207ENST00000578571 MKRN4PQ13434 485 aaPredicted RBP14.12□□□□□ -0.15
PTPRM-207ENST00000578571 ZBTB12Q9Y330 459 aaPredicted RBP14.06□□□□□ -0.16
PTPRM-207ENST00000578571 FBLN2P98095 1184 aa14.05□□□□□ -0.16
PTPRM-207ENST00000578571 FKBP8Q14318 412 aa13.89□□□□□ -0.19
PTPRM-207ENST00000578571 OSCARQ8IYS5 282 aa13.85□□□□□ -0.19
PTPRM-207ENST00000578571 SPDYE4A6NLX3 237 aa13.79□□□□□ -0.2
PTPRM-207ENST00000578571 SPDYE2BA6NHP3 402 aa13.71□□□□□ -0.21
PTPRM-207ENST00000578571 SPDYE6P0CI01 402 aa13.71□□□□□ -0.21
PTPRM-207ENST00000578571 SPDYE2Q495Y8 402 aa13.71□□□□□ -0.21
PTPRM-207ENST00000578571 ZNF692Q9BU19 519 aaPredicted RBP13.66□□□□□ -0.22
PTPRM-207ENST00000578571 SSUH2Q9Y2M2 353 aa13.65□□□□□ -0.22
PTPRM-207ENST00000578571 PROM2Q8N271 834 aa13.63□□□□□ -0.23
PTPRM-207ENST00000578571 RBM42Q9BTD8 480 aaKnown RBP13.61□□□□□ -0.23
PTPRM-207ENST00000578571 PABPN1Q86U42 306 aaKnown RBP eCLIP13.51□□□□□ -0.25
PTPRM-207ENST00000578571 AKT1S1Q96B36 256 aa13.49□□□□□ -0.25
PTPRM-207ENST00000578571 REM2Q8IYK8 340 aaPredicted RBP13.38□□□□□ -0.27
PTPRM-207ENST00000578571 FBXO3Q9UK99 471 aa13.33□□□□□ -0.28
PTPRM-207ENST00000578571 SPDYE1Q8NFV5 336 aaPredicted RBP13.28□□□□□ -0.28
PTPRM-207ENST00000578571 STAG3Q9UJ98 1225 aa13.26□□□□□ -0.29
PTPRM-207ENST00000578571 PITPNM1O00562 1244 aa13.24□□□□□ -0.29
PTPRM-207ENST00000578571 CLEC11AQ9Y240 323 aa13.21□□□□□ -0.29
PTPRM-207ENST00000578571 VASPP50552 380 aaPredicted RBP13.2□□□□□ -0.3
PTPRM-207ENST00000578571 PRR29P0C7W0 189 aa13.1□□□□□ -0.31
PTPRM-207ENST00000578571 CHRDL2Q6WN34 429 aa13.05□□□□□ -0.32
PTPRM-207ENST00000578571 IFNLR1Q8IU57 520 aaPredicted RBP13.05□□□□□ -0.32
PTPRM-207ENST00000578571 MIER1Q8N108 512 aa13.04□□□□□ -0.32
PTPRM-207ENST00000578571 PLCD3Q8N3E9 789 aa13.03□□□□□ -0.32
PTPRM-207ENST00000578571 CREBZFQ9NS37 354 aa13.01□□□□□ -0.33
PTPRM-207ENST00000578571 FXR2P51116 673 aaKnown RBP eCLIP12.97□□□□□ -0.33
PTPRM-207ENST00000578571 POTEHQ6S545 545 aa12.97□□□□□ -0.33
PTPRM-207ENST00000578571 PLEKHG5O94827 1062 aa12.92□□□□□ -0.34
PTPRM-207ENST00000578571 PIP4P2Q8N4L2 257 aa12.92□□□□□ -0.34
PTPRM-207ENST00000578571 MNX1P50219 401 aaPredicted RBP12.91□□□□□ -0.34
PTPRM-207ENST00000578571 CHADLQ6NUI6 762 aa12.91□□□□□ -0.34
PTPRM-207ENST00000578571 KLHL34Q8N239 644 aa12.9□□□□□ -0.34
PTPRM-207ENST00000578571 PRKAR2AP13861 404 aaKnown RBP12.88□□□□□ -0.35
PTPRM-207ENST00000578571 ZBTB47Q9UFB7 747 aaPredicted RBP12.86□□□□□ -0.35
PTPRM-207ENST00000578571 SPOCK2Q92563 424 aa12.84□□□□□ -0.35
PTPRM-207ENST00000578571 RTN4Q9NQC3 1192 aaKnown RBP12.8□□□□□ -0.36
PTPRM-207ENST00000578571 FARP1Q9Y4F1 1045 aaPredicted RBP12.8□□□□□ -0.36
PTPRM-207ENST00000578571 AMER1Q5JTC6 1135 aaPredicted RBP12.79□□□□□ -0.36
PTPRM-207ENST00000578571 NUBP1P53384 320 aa12.76□□□□□ -0.37
PTPRM-207ENST00000578571 NPM1P06748 294 aaKnown RBP eCLIP12.73□□□□□ -0.37
PTPRM-207ENST00000578571 RASEFQ8IZ41 740 aa12.68□□□□□ -0.38
PTPRM-207ENST00000578571 PKD2Q13563 968 aa12.65□□□□□ -0.38
PTPRM-207ENST00000578571 CIZ1Q9ULV3 898 aaPredicted RBP12.61□□□□□ -0.39
PTPRM-207ENST00000578571 FAM212AQ96EL1 285 aa12.6□□□□□ -0.39
PTPRM-207ENST00000578571 DCAF8Q5TAQ9 597 aa12.59□□□□□ -0.39
PTPRM-207ENST00000578571 GSE1Q14687 1217 aa12.58□□□□□ -0.4
PTPRM-207ENST00000578571 TSPYL2Q9H2G4 693 aaPredicted RBP12.55□□□□□ -0.4
PTPRM-207ENST00000578571 C19orf67A6NJJ6 358 aa12.53□□□□□ -0.4
PTPRM-207ENST00000578571 CD44P16070 742 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms