RNA–Protein interactions for RNA: ENST00000578029.1

KRT39-202, Transcript of keratin 39, humanhuman

TSL 3

Gene KRT39, Length 777 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39-202ENST00000578029 AEBP2Q6ZN18 517 aaPredicted RBP17.98■□□□□ 0.47
KRT39-202ENST00000578029 CHIC1Q5VXU3 224 aa17.49■□□□□ 0.39
KRT39-202ENST00000578029 PHF23Q9BUL5 403 aaPredicted RBP15.43■□□□□ 0.06
KRT39-202ENST00000578029 SENP3Q9H4L4 574 aaPredicted RBP15.16■□□□□ 0.02
KRT39-202ENST00000578029 PLPPR3Q6T4P5 718 aa14.48□□□□□ -0.09
KRT39-202ENST00000578029 FOXD1Q16676 465 aa14.14□□□□□ -0.15
KRT39-202ENST00000578029 PPP6R1Q9UPN7 881 aa13.63□□□□□ -0.23
KRT39-202ENST00000578029 ADRA2BP18089 450 aa13.57□□□□□ -0.24
KRT39-202ENST00000578029 KCNA4P22459 653 aa13.26□□□□□ -0.29
KRT39-202ENST00000578029 PIAS4Q8N2W9 510 aaPredicted RBP13.26□□□□□ -0.29
KRT39-202ENST00000578029 EHMT2Q96KQ7 1210 aa13.15□□□□□ -0.3
KRT39-202ENST00000578029 MSH5O43196 834 aa12.97□□□□□ -0.33
KRT39-202ENST00000578029 PPP4R3CPQ6ZMV5 832 aa12.83□□□□□ -0.36
KRT39-202ENST00000578029 SLC4A1APQ9BWU0 796 aaKnown RBP12.78□□□□□ -0.36
KRT39-202ENST00000578029 NCBP3Q53F19 620 aaKnown RBP12.73□□□□□ -0.37
KRT39-202ENST00000578029 CSRNP3Q8WYN3 585 aa12.69□□□□□ -0.38
KRT39-202ENST00000578029 NPM3O75607 178 aaKnown RBP12.48□□□□□ -0.41
KRT39-202ENST00000578029 MAPK8IP2Q13387 824 aaPredicted RBP12.34□□□□□ -0.43
KRT39-202ENST00000578029 CNKSR2Q8WXI2 1034 aa12.34□□□□□ -0.43
KRT39-202ENST00000578029 SCAF1Q9H7N4 1312 aaKnown RBP12.33□□□□□ -0.44
KRT39-202ENST00000578029 ZBTB22O15209 634 aa12.18□□□□□ -0.46
KRT39-202ENST00000578029 DMRT2Q9Y5R5 561 aa12.13□□□□□ -0.47
KRT39-202ENST00000578029 FOXD4L1Q9NU39 408 aa12.05□□□□□ -0.48
KRT39-202ENST00000578029 DNAJC5BQ9UF47 199 aa12.05□□□□□ -0.48
KRT39-202ENST00000578029 RNF216Q9NWF9 866 aaPredicted RBP11.93□□□□□ -0.5
KRT39-202ENST00000578029 POTEDQ86YR6 584 aa11.92□□□□□ -0.5
KRT39-202ENST00000578029 HOXD11P31277 338 aaPredicted RBP11.89□□□□□ -0.51
KRT39-202ENST00000578029 AMER1Q5JTC6 1135 aaPredicted RBP11.63□□□□□ -0.55
KRT39-202ENST00000578029 SLC4A2P04920 1241 aa11.61□□□□□ -0.55
KRT39-202ENST00000578029 ATXN8OSP0DMR3 200 aa11.59□□□□□ -0.55
KRT39-202ENST00000578029 SLC24A1O60721 1099 aa11.57□□□□□ -0.56
KRT39-202ENST00000578029 RTN4Q9NQC3 1192 aaKnown RBP11.57□□□□□ -0.56
KRT39-202ENST00000578029 MYCNP04198 464 aaPredicted RBP11.56□□□□□ -0.56
KRT39-202ENST00000578029 DCAF8L1A6NGE4 600 aa11.51□□□□□ -0.57
KRT39-202ENST00000578029 FKBP8Q14318 412 aa11.45□□□□□ -0.58
KRT39-202ENST00000578029 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.25□□□□□ -0.61
KRT39-202ENST00000578029 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.18□□□□□ -0.62
KRT39-202ENST00000578029 HNRNPUL2Q1KMD3 747 aaKnown RBP11.18□□□□□ -0.62
KRT39-202ENST00000578029 SAMD1Q6SPF0 538 aaPredicted RBP11.16□□□□□ -0.62
KRT39-202ENST00000578029 RNF39Q9H2S5 420 aa11.16□□□□□ -0.62
KRT39-202ENST00000578029 ATF5Q9Y2D1 282 aaPredicted RBP11.14□□□□□ -0.63
KRT39-202ENST00000578029 U3KPZ7 1027 aaPredicted RBP11.14□□□□□ -0.63
KRT39-202ENST00000578029 C1QBPQ07021 282 aaKnown RBP11□□□□□ -0.65
KRT39-202ENST00000578029 ZNF219Q9P2Y4 722 aaPredicted RBP10.93□□□□□ -0.66
KRT39-202ENST00000578029 APLP2Q06481 763 aa10.92□□□□□ -0.66
KRT39-202ENST00000578029 FBXO3Q9UK99 471 aa10.91□□□□□ -0.66
KRT39-202ENST00000578029 CACNB1Q02641 598 aaPredicted RBP10.83□□□□□ -0.68
KRT39-202ENST00000578029 SPINK5Q9NQ38 1064 aaPredicted RBP10.83□□□□□ -0.68
KRT39-202ENST00000578029 SPDYE4A6NLX3 237 aa10.81□□□□□ -0.68
KRT39-202ENST00000578029 CAPN15O75808 1086 aa10.72□□□□□ -0.69
KRT39-202ENST00000578029 PROM2Q8N271 834 aa10.71□□□□□ -0.69
KRT39-202ENST00000578029 VASPP50552 380 aaPredicted RBP10.7□□□□□ -0.7
KRT39-202ENST00000578029 FBLN2P98095 1184 aa10.7□□□□□ -0.7
KRT39-202ENST00000578029 PLCB2Q00722 1185 aa10.7□□□□□ -0.7
KRT39-202ENST00000578029 MKRN4PQ13434 485 aaPredicted RBP10.69□□□□□ -0.7
KRT39-202ENST00000578029 TRHP20396 242 aaPredicted RBP10.67□□□□□ -0.7
KRT39-202ENST00000578029 DSG3P32926 999 aa10.62□□□□□ -0.71
KRT39-202ENST00000578029 IFNLR1Q8IU57 520 aaPredicted RBP10.59□□□□□ -0.71
KRT39-202ENST00000578029 DCAF8L2P0C7V8 631 aa10.58□□□□□ -0.72
KRT39-202ENST00000578029 HAP1P54257 671 aaPredicted RBP10.55□□□□□ -0.72
KRT39-202ENST00000578029 POLA2Q14181 598 aa10.55□□□□□ -0.72
KRT39-202ENST00000578029 ABCB7O75027 752 aa10.54□□□□□ -0.72
KRT39-202ENST00000578029 PKD2Q13563 968 aa10.49□□□□□ -0.73
KRT39-202ENST00000578029 ZBTB12Q9Y330 459 aaPredicted RBP10.47□□□□□ -0.73
KRT39-202ENST00000578029 VSIG10Q8N0Z9 540 aa10.43□□□□□ -0.74
KRT39-202ENST00000578029 BCANQ96GW7 911 aa10.43□□□□□ -0.74
KRT39-202ENST00000578029 KLHL34Q8N239 644 aa10.39□□□□□ -0.75
KRT39-202ENST00000578029 SPOCK2Q92563 424 aa10.38□□□□□ -0.75
KRT39-202ENST00000578029 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.37□□□□□ -0.75
KRT39-202ENST00000578029 BBXQ8WY36 941 aaPredicted RBP10.35□□□□□ -0.75
KRT39-202ENST00000578029 ECM2O94769 699 aaPredicted RBP10.34□□□□□ -0.75
KRT39-202ENST00000578029 STAG3Q9UJ98 1225 aa10.34□□□□□ -0.75
KRT39-202ENST00000578029 ZNF692Q9BU19 519 aaPredicted RBP10.29□□□□□ -0.76
KRT39-202ENST00000578029 PAXIP1Q6ZW49 1069 aaPredicted RBP10.26□□□□□ -0.77
KRT39-202ENST00000578029 PLCD3Q8N3E9 789 aa10.26□□□□□ -0.77
KRT39-202ENST00000578029 TAOK2Q9UL54 1235 aa10.25□□□□□ -0.77
KRT39-202ENST00000578029 CFAP44Q96MT7 982 aa10.23□□□□□ -0.77
KRT39-202ENST00000578029 SPDYE2BA6NHP3 402 aa10.22□□□□□ -0.77
KRT39-202ENST00000578029 NPM1P06748 294 aaKnown RBP eCLIP10.22□□□□□ -0.77
KRT39-202ENST00000578029 SPDYE6P0CI01 402 aa10.22□□□□□ -0.77
KRT39-202ENST00000578029 SPDYE2Q495Y8 402 aa10.22□□□□□ -0.77
KRT39-202ENST00000578029 PRKCSHP14314 528 aaPredicted RBP10.2□□□□□ -0.78
KRT39-202ENST00000578029 MIER1Q8N108 512 aa10.2□□□□□ -0.78
KRT39-202ENST00000578029 KDM2AQ9Y2K7 1162 aa10.2□□□□□ -0.78
KRT39-202ENST00000578029 SSUH2Q9Y2M2 353 aa10.19□□□□□ -0.78
KRT39-202ENST00000578029 RGL2O15211 777 aa10.18□□□□□ -0.78
KRT39-202ENST00000578029 SPRYD3Q8NCJ5 442 aa10.17□□□□□ -0.78
KRT39-202ENST00000578029 PABPN1Q86U42 306 aaKnown RBP eCLIP10.16□□□□□ -0.78
KRT39-202ENST00000578029 OSCARQ8IYS5 282 aa10.16□□□□□ -0.78
KRT39-202ENST00000578029 PLEKHG5O94827 1062 aa10.15□□□□□ -0.78
KRT39-202ENST00000578029 ZBTB47Q9UFB7 747 aaPredicted RBP10.14□□□□□ -0.79
KRT39-202ENST00000578029 CIZ1Q9ULV3 898 aaPredicted RBP10.11□□□□□ -0.79
KRT39-202ENST00000578029 TPRNQ4KMQ1 711 aa10.1□□□□□ -0.79
KRT39-202ENST00000578029 TRIM41Q8WV44 630 aa10.08□□□□□ -0.8
KRT39-202ENST00000578029 TSHZ2Q9NRE2 1034 aa10.08□□□□□ -0.8
KRT39-202ENST00000578029 CHGAP10645 457 aaKnown RBP10.07□□□□□ -0.8
KRT39-202ENST00000578029 RBM42Q9BTD8 480 aaKnown RBP10.04□□□□□ -0.8
KRT39-202ENST00000578029 HS6ST3Q8IZP7 471 aa9.98□□□□□ -0.81
KRT39-202ENST00000578029 GSE1Q14687 1217 aa9.96□□□□□ -0.82
KRT39-202ENST00000578029 AKT1S1Q96B36 256 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms