RNA–Protein interactions for RNA: ENST00000577706.1

TOP2A-203, Transcript of DNA topoisomerase II alpha, humanhuman

TSL 2

Gene TOP2A, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP2A-203ENST00000577706 AEBP2Q6ZN18 517 aaPredicted RBP25.16■■□□□ 1.62
TOP2A-203ENST00000577706 CHIC1Q5VXU3 224 aa23.78■■□□□ 1.4
TOP2A-203ENST00000577706 SENP3Q9H4L4 574 aaPredicted RBP21.55■■□□□ 1.04
TOP2A-203ENST00000577706 PHF23Q9BUL5 403 aaPredicted RBP21.22■□□□□ 0.99
TOP2A-203ENST00000577706 FOXD1Q16676 465 aa20.05■□□□□ 0.8
TOP2A-203ENST00000577706 PLPPR3Q6T4P5 718 aa18.96■□□□□ 0.63
TOP2A-203ENST00000577706 MSH5O43196 834 aa18.94■□□□□ 0.62
TOP2A-203ENST00000577706 POTEDQ86YR6 584 aa18.75■□□□□ 0.59
TOP2A-203ENST00000577706 PIAS4Q8N2W9 510 aaPredicted RBP18.72■□□□□ 0.59
TOP2A-203ENST00000577706 PPP6R1Q9UPN7 881 aa18.64■□□□□ 0.57
TOP2A-203ENST00000577706 ADRA2BP18089 450 aa18.59■□□□□ 0.57
TOP2A-203ENST00000577706 MAPK8IP2Q13387 824 aaPredicted RBP17.12■□□□□ 0.33
TOP2A-203ENST00000577706 SCAF1Q9H7N4 1312 aaKnown RBP17.05■□□□□ 0.32
TOP2A-203ENST00000577706 DMRT2Q9Y5R5 561 aa17.03■□□□□ 0.32
TOP2A-203ENST00000577706 PPP4R3CPQ6ZMV5 832 aa16.6■□□□□ 0.25
TOP2A-203ENST00000577706 DCAF8L1A6NGE4 600 aa16.38■□□□□ 0.21
TOP2A-203ENST00000577706 HOXD11P31277 338 aaPredicted RBP16.34■□□□□ 0.21
TOP2A-203ENST00000577706 CACNB1Q02641 598 aaPredicted RBP16.32■□□□□ 0.2
TOP2A-203ENST00000577706 CNKSR2Q8WXI2 1034 aa16.32■□□□□ 0.2
TOP2A-203ENST00000577706 RNF216Q9NWF9 866 aaPredicted RBP16.2■□□□□ 0.18
TOP2A-203ENST00000577706 RNF39Q9H2S5 420 aa16.08■□□□□ 0.16
TOP2A-203ENST00000577706 NCBP3Q53F19 620 aaKnown RBP15.94■□□□□ 0.14
TOP2A-203ENST00000577706 DNAJC5BQ9UF47 199 aa15.9■□□□□ 0.14
TOP2A-203ENST00000577706 C1QBPQ07021 282 aaKnown RBP15.89■□□□□ 0.13
TOP2A-203ENST00000577706 NPM3O75607 178 aaKnown RBP15.69■□□□□ 0.1
TOP2A-203ENST00000577706 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.61■□□□□ 0.091e-13■■■□□ 15.2
TOP2A-203ENST00000577706 KCNA4P22459 653 aa15.26■□□□□ 0.03
TOP2A-203ENST00000577706 U3KPZ7 1027 aaPredicted RBP15.23■□□□□ 0.03
TOP2A-203ENST00000577706 CAPN15O75808 1086 aa15.06■□□□□ 0
TOP2A-203ENST00000577706 SPINK5Q9NQ38 1064 aaPredicted RBP15.06■□□□□ 0
TOP2A-203ENST00000577706 SLC4A2P04920 1241 aa15□□□□□ -0.01
TOP2A-203ENST00000577706 DSG3P32926 999 aa14.99□□□□□ -0.01
TOP2A-203ENST00000577706 APLP2Q06481 763 aa14.88□□□□□ -0.03
TOP2A-203ENST00000577706 TRHP20396 242 aaPredicted RBP14.8□□□□□ -0.04
TOP2A-203ENST00000577706 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.79□□□□□ -0.04
TOP2A-203ENST00000577706 HNRNPUL2Q1KMD3 747 aaKnown RBP14.79□□□□□ -0.04
TOP2A-203ENST00000577706 ZNF219Q9P2Y4 722 aaPredicted RBP14.76□□□□□ -0.05
TOP2A-203ENST00000577706 ABCB7O75027 752 aa14.69□□□□□ -0.06
TOP2A-203ENST00000577706 SAMD1Q6SPF0 538 aaPredicted RBP14.69□□□□□ -0.06
TOP2A-203ENST00000577706 POTEHQ6S545 545 aa14.68□□□□□ -0.06
TOP2A-203ENST00000577706 MYCNP04198 464 aaPredicted RBP14.52□□□□□ -0.09
TOP2A-203ENST00000577706 RBM42Q9BTD8 480 aaKnown RBP14.4□□□□□ -0.1
TOP2A-203ENST00000577706 SLC4A1APQ9BWU0 796 aaKnown RBP14.4□□□□□ -0.1
TOP2A-203ENST00000577706 POLA2Q14181 598 aa14.36□□□□□ -0.11
TOP2A-203ENST00000577706 FOXD4L1Q9NU39 408 aa14.3□□□□□ -0.12
TOP2A-203ENST00000577706 ATF5Q9Y2D1 282 aaPredicted RBP14.18□□□□□ -0.14
TOP2A-203ENST00000577706 CHRDL2Q6WN34 429 aa14.08□□□□□ -0.16
TOP2A-203ENST00000577706 ZBTB12Q9Y330 459 aaPredicted RBP14.08□□□□□ -0.16
TOP2A-203ENST00000577706 ZBTB22O15209 634 aa14.01□□□□□ -0.17
TOP2A-203ENST00000577706 AKT1S1Q96B36 256 aa13.97□□□□□ -0.17
TOP2A-203ENST00000577706 OSCARQ8IYS5 282 aa13.89□□□□□ -0.19
TOP2A-203ENST00000577706 ATXN8OSP0DMR3 200 aa13.88□□□□□ -0.19
TOP2A-203ENST00000577706 REM2Q8IYK8 340 aaPredicted RBP13.83□□□□□ -0.2
TOP2A-203ENST00000577706 PITPNM1O00562 1244 aa13.67□□□□□ -0.22
TOP2A-203ENST00000577706 FBLN2P98095 1184 aa13.67□□□□□ -0.22
TOP2A-203ENST00000577706 PIP4P2Q8N4L2 257 aa13.67□□□□□ -0.22
TOP2A-203ENST00000577706 SP7Q8TDD2 431 aaPredicted RBP13.67□□□□□ -0.22
TOP2A-203ENST00000577706 SPDYE2BA6NHP3 402 aa13.61□□□□□ -0.23
TOP2A-203ENST00000577706 SPDYE6P0CI01 402 aa13.61□□□□□ -0.23
TOP2A-203ENST00000577706 SPDYE2Q495Y8 402 aa13.61□□□□□ -0.23
TOP2A-203ENST00000577706 FXR2P51116 673 aaKnown RBP eCLIP13.58□□□□□ -0.247e-8■■□□□ 13.1
TOP2A-203ENST00000577706 MKRN4PQ13434 485 aaPredicted RBP13.51□□□□□ -0.25
TOP2A-203ENST00000577706 HAX1O00165 279 aa13.5□□□□□ -0.25
TOP2A-203ENST00000577706 ZNF692Q9BU19 519 aaPredicted RBP13.44□□□□□ -0.26
TOP2A-203ENST00000577706 SPDYE1Q8NFV5 336 aaPredicted RBP13.42□□□□□ -0.26
TOP2A-203ENST00000577706 CLEC11AQ9Y240 323 aa13.41□□□□□ -0.26
TOP2A-203ENST00000577706 SSUH2Q9Y2M2 353 aa13.4□□□□□ -0.26
TOP2A-203ENST00000577706 PRKAR2AP13861 404 aaKnown RBP13.33□□□□□ -0.28
TOP2A-203ENST00000577706 EVX2Q03828 476 aa13.28□□□□□ -0.28
TOP2A-203ENST00000577706 EHMT2Q96KQ7 1210 aa13.28□□□□□ -0.28
TOP2A-203ENST00000577706 CSRNP3Q8WYN3 585 aa13.27□□□□□ -0.29
TOP2A-203ENST00000577706 PABPN1Q86U42 306 aaKnown RBP eCLIP13.23□□□□□ -0.29
TOP2A-203ENST00000577706 PRR29P0C7W0 189 aa13.17□□□□□ -0.3
TOP2A-203ENST00000577706 C19orf67A6NJJ6 358 aa13.15□□□□□ -0.3
TOP2A-203ENST00000577706 CHADLQ6NUI6 762 aa13.15□□□□□ -0.3
TOP2A-203ENST00000577706 GABBR2O75899 941 aa12.99□□□□□ -0.33
TOP2A-203ENST00000577706 FARP1Q9Y4F1 1045 aaPredicted RBP12.94□□□□□ -0.34
TOP2A-203ENST00000577706 CD44P16070 742 aaKnown RBP12.9□□□□□ -0.34
TOP2A-203ENST00000577706 CLCN6P51797 869 aa12.87□□□□□ -0.35
TOP2A-203ENST00000577706 STAG3Q9UJ98 1225 aa12.86□□□□□ -0.35
TOP2A-203ENST00000577706 SPDYE4A6NLX3 237 aa12.84□□□□□ -0.35
TOP2A-203ENST00000577706 LHX8Q68G74 356 aa12.8□□□□□ -0.36
TOP2A-203ENST00000577706 CREBZFQ9NS37 354 aa12.78□□□□□ -0.36
TOP2A-203ENST00000577706 POTEIP0CG38 1075 aa12.7□□□□□ -0.38
TOP2A-203ENST00000577706 ZRANB1Q9UGI0 708 aa12.7□□□□□ -0.38
TOP2A-203ENST00000577706 ZNF579Q8NAF0 562 aaKnown RBP12.68□□□□□ -0.38
TOP2A-203ENST00000577706 DCBLD2Q96PD2 775 aa12.65□□□□□ -0.38
TOP2A-203ENST00000577706 PAK3O75914 559 aaPredicted RBP12.59□□□□□ -0.39
TOP2A-203ENST00000577706 NPM1P06748 294 aaKnown RBP eCLIP12.58□□□□□ -0.4
TOP2A-203ENST00000577706 GALR2O43603 387 aaPredicted RBP12.54□□□□□ -0.4
TOP2A-203ENST00000577706 MNX1P50219 401 aaPredicted RBP12.53□□□□□ -0.4
TOP2A-203ENST00000577706 PHF12Q96QT6 1004 aa12.5□□□□□ -0.41
TOP2A-203ENST00000577706 PROM2Q8N271 834 aa12.47□□□□□ -0.41
TOP2A-203ENST00000577706 TSPYL2Q9H2G4 693 aaPredicted RBP12.34□□□□□ -0.43
TOP2A-203ENST00000577706 MS4A3Q96HJ5 214 aa12.33□□□□□ -0.44
TOP2A-203ENST00000577706 PLEKHG5O94827 1062 aa12.3□□□□□ -0.44
TOP2A-203ENST00000577706 PELP1Q8IZL8 1130 aaKnown RBP12.3□□□□□ -0.44
TOP2A-203ENST00000577706 MIER1Q8N108 512 aa12.29□□□□□ -0.44
TOP2A-203ENST00000577706 POTEB2H3BUK9 544 aa12.28□□□□□ -0.44
TOP2A-203ENST00000577706 ASTLQ6HA08 431 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms