RNA–Protein interactions for RNA: ENST00000574194.1

ERCC4-205, Transcript of ERCC excision repair 4, endonuclease catalytic subunit, humanhuman

TSL 3

Gene ERCC4, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4-205ENST00000574194 AEBP2Q6ZN18 517 aaPredicted RBP24.18■■□□□ 1.46
ERCC4-205ENST00000574194 CHIC1Q5VXU3 224 aa23.08■■□□□ 1.29
ERCC4-205ENST00000574194 SENP3Q9H4L4 574 aaPredicted RBP20.49■□□□□ 0.87
ERCC4-205ENST00000574194 PHF23Q9BUL5 403 aaPredicted RBP20.32■□□□□ 0.84
ERCC4-205ENST00000574194 FOXD1Q16676 465 aa19.16■□□□□ 0.66
ERCC4-205ENST00000574194 PLPPR3Q6T4P5 718 aa18.5■□□□□ 0.55
ERCC4-205ENST00000574194 PPP6R1Q9UPN7 881 aa18.1■□□□□ 0.49
ERCC4-205ENST00000574194 ADRA2BP18089 450 aa18.07■□□□□ 0.48
ERCC4-205ENST00000574194 PIAS4Q8N2W9 510 aaPredicted RBP17.94■□□□□ 0.46
ERCC4-205ENST00000574194 MSH5O43196 834 aa17.75■□□□□ 0.43
ERCC4-205ENST00000574194 POTEDQ86YR6 584 aa17.09■□□□□ 0.33
ERCC4-205ENST00000574194 MAPK8IP2Q13387 824 aaPredicted RBP16.56■□□□□ 0.24
ERCC4-205ENST00000574194 SCAF1Q9H7N4 1312 aaKnown RBP16.4■□□□□ 0.22
ERCC4-205ENST00000574194 PPP4R3CPQ6ZMV5 832 aa16.3■□□□□ 0.2
ERCC4-205ENST00000574194 DMRT2Q9Y5R5 561 aa16.3■□□□□ 0.2
ERCC4-205ENST00000574194 CNKSR2Q8WXI2 1034 aa15.89■□□□□ 0.13
ERCC4-205ENST00000574194 HOXD11P31277 338 aaPredicted RBP15.75■□□□□ 0.11
ERCC4-205ENST00000574194 DCAF8L1A6NGE4 600 aa15.74■□□□□ 0.11
ERCC4-205ENST00000574194 RNF216Q9NWF9 866 aaPredicted RBP15.68■□□□□ 0.1
ERCC4-205ENST00000574194 NCBP3Q53F19 620 aaKnown RBP15.66■□□□□ 0.1
ERCC4-205ENST00000574194 NPM3O75607 178 aaKnown RBP15.5■□□□□ 0.07
ERCC4-205ENST00000574194 KCNA4P22459 653 aa15.42■□□□□ 0.06
ERCC4-205ENST00000574194 CACNB1Q02641 598 aaPredicted RBP15.21■□□□□ 0.03
ERCC4-205ENST00000574194 RNF39Q9H2S5 420 aa15.2■□□□□ 0.02
ERCC4-205ENST00000574194 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.08■□□□□ 0
ERCC4-205ENST00000574194 DNAJC5BQ9UF47 199 aa15.05■□□□□ -0
ERCC4-205ENST00000574194 C1QBPQ07021 282 aaKnown RBP14.95□□□□□ -0.02
ERCC4-205ENST00000574194 U3KPZ7 1027 aaPredicted RBP14.78□□□□□ -0.04
ERCC4-205ENST00000574194 SLC4A2P04920 1241 aa14.77□□□□□ -0.05
ERCC4-205ENST00000574194 SLC4A1APQ9BWU0 796 aaKnown RBP14.57□□□□□ -0.08
ERCC4-205ENST00000574194 SPINK5Q9NQ38 1064 aaPredicted RBP14.56□□□□□ -0.08
ERCC4-205ENST00000574194 CAPN15O75808 1086 aa14.5□□□□□ -0.09
ERCC4-205ENST00000574194 TRHP20396 242 aaPredicted RBP14.34□□□□□ -0.11
ERCC4-205ENST00000574194 DSG3P32926 999 aa14.33□□□□□ -0.12
ERCC4-205ENST00000574194 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.32□□□□□ -0.12
ERCC4-205ENST00000574194 HNRNPUL2Q1KMD3 747 aaKnown RBP14.32□□□□□ -0.12
ERCC4-205ENST00000574194 MYCNP04198 464 aaPredicted RBP14.28□□□□□ -0.12
ERCC4-205ENST00000574194 SAMD1Q6SPF0 538 aaPredicted RBP14.28□□□□□ -0.12
ERCC4-205ENST00000574194 APLP2Q06481 763 aa14.26□□□□□ -0.13
ERCC4-205ENST00000574194 FOXD4L1Q9NU39 408 aa14.26□□□□□ -0.13
ERCC4-205ENST00000574194 ABCB7O75027 752 aa14.23□□□□□ -0.13
ERCC4-205ENST00000574194 ZBTB22O15209 634 aa14.19□□□□□ -0.14
ERCC4-205ENST00000574194 ZNF219Q9P2Y4 722 aaPredicted RBP14.19□□□□□ -0.14
ERCC4-205ENST00000574194 ATF5Q9Y2D1 282 aaPredicted RBP14.05□□□□□ -0.16
ERCC4-205ENST00000574194 POLA2Q14181 598 aa13.97□□□□□ -0.17
ERCC4-205ENST00000574194 ATXN8OSP0DMR3 200 aa13.72□□□□□ -0.21
ERCC4-205ENST00000574194 CSRNP3Q8WYN3 585 aa13.7□□□□□ -0.22
ERCC4-205ENST00000574194 EHMT2Q96KQ7 1210 aa13.69□□□□□ -0.22
ERCC4-205ENST00000574194 RBM42Q9BTD8 480 aaKnown RBP13.59□□□□□ -0.23
ERCC4-205ENST00000574194 ZBTB12Q9Y330 459 aaPredicted RBP13.57□□□□□ -0.24
ERCC4-205ENST00000574194 OSCARQ8IYS5 282 aa13.52□□□□□ -0.25
ERCC4-205ENST00000574194 POTEHQ6S545 545 aa13.42□□□□□ -0.26
ERCC4-205ENST00000574194 FBLN2P98095 1184 aa13.39□□□□□ -0.27
ERCC4-205ENST00000574194 MKRN4PQ13434 485 aaPredicted RBP13.38□□□□□ -0.27
ERCC4-205ENST00000574194 AKT1S1Q96B36 256 aa13.34□□□□□ -0.27
ERCC4-205ENST00000574194 CHRDL2Q6WN34 429 aa13.29□□□□□ -0.28
ERCC4-205ENST00000574194 REM2Q8IYK8 340 aaPredicted RBP13.28□□□□□ -0.28
ERCC4-205ENST00000574194 SPDYE2BA6NHP3 402 aa13.21□□□□□ -0.29
ERCC4-205ENST00000574194 SPDYE6P0CI01 402 aa13.21□□□□□ -0.29
ERCC4-205ENST00000574194 SPDYE2Q495Y8 402 aa13.21□□□□□ -0.29
ERCC4-205ENST00000574194 ZNF692Q9BU19 519 aaPredicted RBP13.15□□□□□ -0.3
ERCC4-205ENST00000574194 PITPNM1O00562 1244 aa13.14□□□□□ -0.31
ERCC4-205ENST00000574194 SSUH2Q9Y2M2 353 aa13.07□□□□□ -0.32
ERCC4-205ENST00000574194 PIP4P2Q8N4L2 257 aa13.03□□□□□ -0.32
ERCC4-205ENST00000574194 CLEC11AQ9Y240 323 aa13.02□□□□□ -0.33
ERCC4-205ENST00000574194 PABPN1Q86U42 306 aaKnown RBP eCLIP12.98□□□□□ -0.33
ERCC4-205ENST00000574194 FXR2P51116 673 aaKnown RBP eCLIP12.95□□□□□ -0.34
ERCC4-205ENST00000574194 SPDYE1Q8NFV5 336 aaPredicted RBP12.95□□□□□ -0.34
ERCC4-205ENST00000574194 SPDYE4A6NLX3 237 aa12.83□□□□□ -0.36
ERCC4-205ENST00000574194 PRKAR2AP13861 404 aaKnown RBP12.82□□□□□ -0.36
ERCC4-205ENST00000574194 PRR29P0C7W0 189 aa12.78□□□□□ -0.36
ERCC4-205ENST00000574194 HAX1O00165 279 aa12.77□□□□□ -0.37
ERCC4-205ENST00000574194 CHADLQ6NUI6 762 aa12.77□□□□□ -0.37
ERCC4-205ENST00000574194 EVX2Q03828 476 aa12.67□□□□□ -0.38
ERCC4-205ENST00000574194 SP7Q8TDD2 431 aaPredicted RBP12.66□□□□□ -0.38
ERCC4-205ENST00000574194 STAG3Q9UJ98 1225 aa12.56□□□□□ -0.4
ERCC4-205ENST00000574194 C19orf67A6NJJ6 358 aa12.53□□□□□ -0.4
ERCC4-205ENST00000574194 FARP1Q9Y4F1 1045 aaPredicted RBP12.53□□□□□ -0.4
ERCC4-205ENST00000574194 CREBZFQ9NS37 354 aa12.51□□□□□ -0.41
ERCC4-205ENST00000574194 PROM2Q8N271 834 aa12.46□□□□□ -0.41
ERCC4-205ENST00000574194 FKBP8Q14318 412 aa12.43□□□□□ -0.42
ERCC4-205ENST00000574194 CD44P16070 742 aaKnown RBP12.42□□□□□ -0.42
ERCC4-205ENST00000574194 GABBR2O75899 941 aa12.33□□□□□ -0.44
ERCC4-205ENST00000574194 MNX1P50219 401 aaPredicted RBP12.3□□□□□ -0.44
ERCC4-205ENST00000574194 ZRANB1Q9UGI0 708 aa12.29□□□□□ -0.44
ERCC4-205ENST00000574194 MIER1Q8N108 512 aa12.24□□□□□ -0.45
ERCC4-205ENST00000574194 NPM1P06748 294 aaKnown RBP eCLIP12.23□□□□□ -0.45
ERCC4-205ENST00000574194 ZNF579Q8NAF0 562 aaKnown RBP12.18□□□□□ -0.46
ERCC4-205ENST00000574194 PHF12Q96QT6 1004 aa12.17□□□□□ -0.46
ERCC4-205ENST00000574194 PAK3O75914 559 aaPredicted RBP12.16□□□□□ -0.46
ERCC4-205ENST00000574194 PLCD3Q8N3E9 789 aa12.16□□□□□ -0.46
ERCC4-205ENST00000574194 TSPYL2Q9H2G4 693 aaPredicted RBP12.13□□□□□ -0.47
ERCC4-205ENST00000574194 PLEKHG5O94827 1062 aa12.12□□□□□ -0.47
ERCC4-205ENST00000574194 GALR2O43603 387 aaPredicted RBP12.1□□□□□ -0.47
ERCC4-205ENST00000574194 POTEIP0CG38 1075 aa12.1□□□□□ -0.47
ERCC4-205ENST00000574194 CLCN6P51797 869 aa12.04□□□□□ -0.48
ERCC4-205ENST00000574194 RASEFQ8IZ41 740 aa12.04□□□□□ -0.48
ERCC4-205ENST00000574194 DCBLD2Q96PD2 775 aa12.03□□□□□ -0.48
ERCC4-205ENST00000574194 FBXO3Q9UK99 471 aa12.01□□□□□ -0.49
ERCC4-205ENST00000574194 CCDC61Q9Y6R9 512 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms