RNA–Protein interactions for RNA: ENST00000572905.1

TOM1L1-215, Transcript of target of myb1 like 1 membrane trafficking protein, humanhuman

TSL 3

Gene TOM1L1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOM1L1-215ENST00000572905 AEBP2Q6ZN18 517 aaPredicted RBP28.54■■■□□ 2.16
TOM1L1-215ENST00000572905 CHIC1Q5VXU3 224 aa27.34■■□□□ 1.97
TOM1L1-215ENST00000572905 SENP3Q9H4L4 574 aaPredicted RBP24.27■■□□□ 1.48
TOM1L1-215ENST00000572905 PHF23Q9BUL5 403 aaPredicted RBP24.02■■□□□ 1.44
TOM1L1-215ENST00000572905 FOXD1Q16676 465 aa22.62■■□□□ 1.21
TOM1L1-215ENST00000572905 PLPPR3Q6T4P5 718 aa21.98■■□□□ 1.11
TOM1L1-215ENST00000572905 PPP6R1Q9UPN7 881 aa21.37■■□□□ 1.01
TOM1L1-215ENST00000572905 ADRA2BP18089 450 aa21.34■■□□□ 1.01
TOM1L1-215ENST00000572905 PIAS4Q8N2W9 510 aaPredicted RBP21.23■□□□□ 0.99
TOM1L1-215ENST00000572905 MSH5O43196 834 aa21.04■□□□□ 0.96
TOM1L1-215ENST00000572905 POTEDQ86YR6 584 aa20.09■□□□□ 0.81
TOM1L1-215ENST00000572905 MAPK8IP2Q13387 824 aaPredicted RBP19.53■□□□□ 0.72
TOM1L1-215ENST00000572905 SCAF1Q9H7N4 1312 aaKnown RBP19.47■□□□□ 0.71
TOM1L1-215ENST00000572905 PPP4R3CPQ6ZMV5 832 aa19.32■□□□□ 0.68
TOM1L1-215ENST00000572905 DMRT2Q9Y5R5 561 aa19.29■□□□□ 0.68
TOM1L1-215ENST00000572905 CNKSR2Q8WXI2 1034 aa18.87■□□□□ 0.61
TOM1L1-215ENST00000572905 HOXD11P31277 338 aaPredicted RBP18.67■□□□□ 0.58
TOM1L1-215ENST00000572905 NCBP3Q53F19 620 aaKnown RBP18.64■□□□□ 0.57
TOM1L1-215ENST00000572905 RNF216Q9NWF9 866 aaPredicted RBP18.62■□□□□ 0.57
TOM1L1-215ENST00000572905 DCAF8L1A6NGE4 600 aa18.6■□□□□ 0.57
TOM1L1-215ENST00000572905 NPM3O75607 178 aaKnown RBP18.4■□□□□ 0.54
TOM1L1-215ENST00000572905 KCNA4P22459 653 aa18.31■□□□□ 0.52
TOM1L1-215ENST00000572905 RNF39Q9H2S5 420 aa17.97■□□□□ 0.47
TOM1L1-215ENST00000572905 CACNB1Q02641 598 aaPredicted RBP17.93■□□□□ 0.46
TOM1L1-215ENST00000572905 DNAJC5BQ9UF47 199 aa17.89■□□□□ 0.45
TOM1L1-215ENST00000572905 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.86■□□□□ 0.45
TOM1L1-215ENST00000572905 C1QBPQ07021 282 aaKnown RBP17.71■□□□□ 0.43
TOM1L1-215ENST00000572905 U3KPZ7 1027 aaPredicted RBP17.49■□□□□ 0.39
TOM1L1-215ENST00000572905 SLC4A2P04920 1241 aa17.48■□□□□ 0.39
TOM1L1-215ENST00000572905 SLC4A1APQ9BWU0 796 aaKnown RBP17.34■□□□□ 0.37
TOM1L1-215ENST00000572905 SPINK5Q9NQ38 1064 aaPredicted RBP17.19■□□□□ 0.34
TOM1L1-215ENST00000572905 CAPN15O75808 1086 aa17.16■□□□□ 0.34
TOM1L1-215ENST00000572905 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.05■□□□□ 0.32
TOM1L1-215ENST00000572905 HNRNPUL2Q1KMD3 747 aaKnown RBP17.05■□□□□ 0.32
TOM1L1-215ENST00000572905 APLP2Q06481 763 aa17■□□□□ 0.31
TOM1L1-215ENST00000572905 MYCNP04198 464 aaPredicted RBP16.99■□□□□ 0.31
TOM1L1-215ENST00000572905 SAMD1Q6SPF0 538 aaPredicted RBP16.98■□□□□ 0.31
TOM1L1-215ENST00000572905 FOXD4L1Q9NU39 408 aa16.98■□□□□ 0.31
TOM1L1-215ENST00000572905 TRHP20396 242 aaPredicted RBP16.96■□□□□ 0.31
TOM1L1-215ENST00000572905 DSG3P32926 999 aa16.94■□□□□ 0.3
TOM1L1-215ENST00000572905 ZNF219Q9P2Y4 722 aaPredicted RBP16.88■□□□□ 0.29
TOM1L1-215ENST00000572905 ZBTB22O15209 634 aa16.84■□□□□ 0.29
TOM1L1-215ENST00000572905 ABCB7O75027 752 aa16.81■□□□□ 0.28
TOM1L1-215ENST00000572905 ATF5Q9Y2D1 282 aaPredicted RBP16.63■□□□□ 0.25
TOM1L1-215ENST00000572905 POLA2Q14181 598 aa16.54■□□□□ 0.24
TOM1L1-215ENST00000572905 ATXN8OSP0DMR3 200 aa16.37■□□□□ 0.21
TOM1L1-215ENST00000572905 EHMT2Q96KQ7 1210 aa16.33■□□□□ 0.2
TOM1L1-215ENST00000572905 CSRNP3Q8WYN3 585 aa16.3■□□□□ 0.2
TOM1L1-215ENST00000572905 ZBTB12Q9Y330 459 aaPredicted RBP16.17■□□□□ 0.18
TOM1L1-215ENST00000572905 RBM42Q9BTD8 480 aaKnown RBP16.14■□□□□ 0.17
TOM1L1-215ENST00000572905 OSCARQ8IYS5 282 aa16.03■□□□□ 0.16
TOM1L1-215ENST00000572905 FBLN2P98095 1184 aa15.94■□□□□ 0.14
TOM1L1-215ENST00000572905 MKRN4PQ13434 485 aaPredicted RBP15.85■□□□□ 0.13
TOM1L1-215ENST00000572905 AKT1S1Q96B36 256 aa15.82■□□□□ 0.12
TOM1L1-215ENST00000572905 POTEHQ6S545 545 aa15.81■□□□□ 0.12
TOM1L1-215ENST00000572905 CHRDL2Q6WN34 429 aa15.7■□□□□ 0.1
TOM1L1-215ENST00000572905 REM2Q8IYK8 340 aaPredicted RBP15.7■□□□□ 0.1
TOM1L1-215ENST00000572905 SPDYE2BA6NHP3 402 aa15.69■□□□□ 0.1
TOM1L1-215ENST00000572905 SPDYE6P0CI01 402 aa15.69■□□□□ 0.1
TOM1L1-215ENST00000572905 SPDYE2Q495Y8 402 aa15.69■□□□□ 0.1
TOM1L1-215ENST00000572905 ZNF692Q9BU19 519 aaPredicted RBP15.6■□□□□ 0.09
TOM1L1-215ENST00000572905 PITPNM1O00562 1244 aa15.55■□□□□ 0.08
TOM1L1-215ENST00000572905 SSUH2Q9Y2M2 353 aa15.52■□□□□ 0.08
TOM1L1-215ENST00000572905 CLEC11AQ9Y240 323 aa15.41■□□□□ 0.06
TOM1L1-215ENST00000572905 PABPN1Q86U42 306 aaKnown RBP eCLIP15.39■□□□□ 0.05
TOM1L1-215ENST00000572905 PIP4P2Q8N4L2 257 aa15.39■□□□□ 0.05
TOM1L1-215ENST00000572905 SPDYE1Q8NFV5 336 aaPredicted RBP15.37■□□□□ 0.05
TOM1L1-215ENST00000572905 FXR2P51116 673 aaKnown RBP eCLIP15.32■□□□□ 0.04
TOM1L1-215ENST00000572905 SPDYE4A6NLX3 237 aa15.25■□□□□ 0.03
TOM1L1-215ENST00000572905 PRKAR2AP13861 404 aaKnown RBP15.16■□□□□ 0.02
TOM1L1-215ENST00000572905 PRR29P0C7W0 189 aa15.15■□□□□ 0.02
TOM1L1-215ENST00000572905 CHADLQ6NUI6 762 aa15.08■□□□□ 0
TOM1L1-215ENST00000572905 HAX1O00165 279 aa15.07■□□□□ 0
TOM1L1-215ENST00000572905 STAG3Q9UJ98 1225 aa14.97□□□□□ -0.01
TOM1L1-215ENST00000572905 SP7Q8TDD2 431 aaPredicted RBP14.94□□□□□ -0.02
TOM1L1-215ENST00000572905 EVX2Q03828 476 aa14.89□□□□□ -0.03
TOM1L1-215ENST00000572905 PROM2Q8N271 834 aa14.85□□□□□ -0.03
TOM1L1-215ENST00000572905 FARP1Q9Y4F1 1045 aaPredicted RBP14.83□□□□□ -0.04
TOM1L1-215ENST00000572905 C19orf67A6NJJ6 358 aa14.82□□□□□ -0.04
TOM1L1-215ENST00000572905 CREBZFQ9NS37 354 aa14.82□□□□□ -0.04
TOM1L1-215ENST00000572905 FKBP8Q14318 412 aa14.81□□□□□ -0.04
TOM1L1-215ENST00000572905 CD44P16070 742 aaKnown RBP14.7□□□□□ -0.06
TOM1L1-215ENST00000572905 MNX1P50219 401 aaPredicted RBP14.58□□□□□ -0.08
TOM1L1-215ENST00000572905 GABBR2O75899 941 aa14.56□□□□□ -0.08
TOM1L1-215ENST00000572905 NPM1P06748 294 aaKnown RBP eCLIP14.55□□□□□ -0.08
TOM1L1-215ENST00000572905 MIER1Q8N108 512 aa14.54□□□□□ -0.08
TOM1L1-215ENST00000572905 ZRANB1Q9UGI0 708 aa14.54□□□□□ -0.08
TOM1L1-215ENST00000572905 PLEKHG5O94827 1062 aa14.49□□□□□ -0.09
TOM1L1-215ENST00000572905 PAK3O75914 559 aaPredicted RBP14.47□□□□□ -0.09
TOM1L1-215ENST00000572905 PLCD3Q8N3E9 789 aa14.46□□□□□ -0.09
TOM1L1-215ENST00000572905 ZNF579Q8NAF0 562 aaKnown RBP14.44□□□□□ -0.1
TOM1L1-215ENST00000572905 PHF12Q96QT6 1004 aa14.37□□□□□ -0.11
TOM1L1-215ENST00000572905 TSPYL2Q9H2G4 693 aaPredicted RBP14.36□□□□□ -0.11
TOM1L1-215ENST00000572905 FBXO3Q9UK99 471 aa14.36□□□□□ -0.11
TOM1L1-215ENST00000572905 CLCN6P51797 869 aa14.33□□□□□ -0.12
TOM1L1-215ENST00000572905 GALR2O43603 387 aaPredicted RBP14.3□□□□□ -0.12
TOM1L1-215ENST00000572905 ZBTB47Q9UFB7 747 aaPredicted RBP14.28□□□□□ -0.12
TOM1L1-215ENST00000572905 RASEFQ8IZ41 740 aa14.27□□□□□ -0.13
TOM1L1-215ENST00000572905 POTEIP0CG38 1075 aa14.25□□□□□ -0.13
TOM1L1-215ENST00000572905 DCBLD2Q96PD2 775 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 132.1 ms