RNA–Protein interactions for RNA: ENST00000567320.1

CDH1-211, Transcript of cadherin 1, humanhuman

TSL 3

Gene CDH1, Length 352 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-211ENST00000567320 AEBP2Q6ZN18 517 aaPredicted RBP23.05■■□□□ 1.28
CDH1-211ENST00000567320 CHIC1Q5VXU3 224 aa22.09■■□□□ 1.13
CDH1-211ENST00000567320 SENP3Q9H4L4 574 aaPredicted RBP19.7■□□□□ 0.74
CDH1-211ENST00000567320 PHF23Q9BUL5 403 aaPredicted RBP19.47■□□□□ 0.71
CDH1-211ENST00000567320 FOXD1Q16676 465 aa18.32■□□□□ 0.52
CDH1-211ENST00000567320 PLPPR3Q6T4P5 718 aa17.78■□□□□ 0.44
CDH1-211ENST00000567320 ADRA2BP18089 450 aa17.26■□□□□ 0.35
CDH1-211ENST00000567320 PPP6R1Q9UPN7 881 aa17.25■□□□□ 0.35
CDH1-211ENST00000567320 PIAS4Q8N2W9 510 aaPredicted RBP17.23■□□□□ 0.35
CDH1-211ENST00000567320 MSH5O43196 834 aa17.1■□□□□ 0.33
CDH1-211ENST00000567320 POTEDQ86YR6 584 aa16.36■□□□□ 0.21
CDH1-211ENST00000567320 SCAF1Q9H7N4 1312 aaKnown RBP15.84■□□□□ 0.13
CDH1-211ENST00000567320 MAPK8IP2Q13387 824 aaPredicted RBP15.79■□□□□ 0.12
CDH1-211ENST00000567320 DMRT2Q9Y5R5 561 aa15.62■□□□□ 0.09
CDH1-211ENST00000567320 PPP4R3CPQ6ZMV5 832 aa15.61■□□□□ 0.09
CDH1-211ENST00000567320 CNKSR2Q8WXI2 1034 aa15.27■□□□□ 0.04
CDH1-211ENST00000567320 DCAF8L1A6NGE4 600 aa15.15■□□□□ 0.02
CDH1-211ENST00000567320 NCBP3Q53F19 620 aaKnown RBP15.12■□□□□ 0.01
CDH1-211ENST00000567320 HOXD11P31277 338 aaPredicted RBP15.08■□□□□ 0
CDH1-211ENST00000567320 RNF216Q9NWF9 866 aaPredicted RBP15.06■□□□□ 0
CDH1-211ENST00000567320 NPM3O75607 178 aaKnown RBP14.82□□□□□ -0.04
CDH1-211ENST00000567320 KCNA4P22459 653 aa14.73□□□□□ -0.05
CDH1-211ENST00000567320 CACNB1Q02641 598 aaPredicted RBP14.63□□□□□ -0.07
CDH1-211ENST00000567320 RNF39Q9H2S5 420 aa14.57□□□□□ -0.08
CDH1-211ENST00000567320 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.52□□□□□ -0.09
CDH1-211ENST00000567320 DNAJC5BQ9UF47 199 aa14.47□□□□□ -0.09
CDH1-211ENST00000567320 C1QBPQ07021 282 aaKnown RBP14.39□□□□□ -0.11
CDH1-211ENST00000567320 U3KPZ7 1027 aaPredicted RBP14.13□□□□□ -0.15
CDH1-211ENST00000567320 SLC4A2P04920 1241 aa14.08□□□□□ -0.16
CDH1-211ENST00000567320 SLC4A1APQ9BWU0 796 aaKnown RBP13.98□□□□□ -0.17
CDH1-211ENST00000567320 CAPN15O75808 1086 aa13.96□□□□□ -0.17
CDH1-211ENST00000567320 SPINK5Q9NQ38 1064 aaPredicted RBP13.9□□□□□ -0.18
CDH1-211ENST00000567320 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.86□□□□□ -0.19
CDH1-211ENST00000567320 HNRNPUL2Q1KMD3 747 aaKnown RBP13.86□□□□□ -0.19
CDH1-211ENST00000567320 APLP2Q06481 763 aa13.84□□□□□ -0.19
CDH1-211ENST00000567320 TRHP20396 242 aaPredicted RBP13.78□□□□□ -0.2
CDH1-211ENST00000567320 SAMD1Q6SPF0 538 aaPredicted RBP13.78□□□□□ -0.2
CDH1-211ENST00000567320 MYCNP04198 464 aaPredicted RBP13.73□□□□□ -0.21
CDH1-211ENST00000567320 DSG3P32926 999 aa13.71□□□□□ -0.21
CDH1-211ENST00000567320 ZNF219Q9P2Y4 722 aaPredicted RBP13.7□□□□□ -0.22
CDH1-211ENST00000567320 FOXD4L1Q9NU39 408 aa13.69□□□□□ -0.22
CDH1-211ENST00000567320 ABCB7O75027 752 aa13.64□□□□□ -0.23
CDH1-211ENST00000567320 ZBTB22O15209 634 aa13.49□□□□□ -0.25
CDH1-211ENST00000567320 POLA2Q14181 598 aa13.41□□□□□ -0.26
CDH1-211ENST00000567320 ATF5Q9Y2D1 282 aaPredicted RBP13.38□□□□□ -0.27
CDH1-211ENST00000567320 ATXN8OSP0DMR3 200 aa13.21□□□□□ -0.29
CDH1-211ENST00000567320 ZBTB12Q9Y330 459 aaPredicted RBP13.14□□□□□ -0.31
CDH1-211ENST00000567320 RBM42Q9BTD8 480 aaKnown RBP13.13□□□□□ -0.31
CDH1-211ENST00000567320 EHMT2Q96KQ7 1210 aa13.12□□□□□ -0.31
CDH1-211ENST00000567320 CSRNP3Q8WYN3 585 aa13.06□□□□□ -0.32
CDH1-211ENST00000567320 OSCARQ8IYS5 282 aa12.96□□□□□ -0.33
CDH1-211ENST00000567320 FBLN2P98095 1184 aa12.93□□□□□ -0.34
CDH1-211ENST00000567320 POTEHQ6S545 545 aa12.88□□□□□ -0.35
CDH1-211ENST00000567320 AKT1S1Q96B36 256 aa12.84□□□□□ -0.35
CDH1-211ENST00000567320 CHRDL2Q6WN34 429 aa12.77□□□□□ -0.37
CDH1-211ENST00000567320 MKRN4PQ13434 485 aaPredicted RBP12.75□□□□□ -0.37
CDH1-211ENST00000567320 REM2Q8IYK8 340 aaPredicted RBP12.73□□□□□ -0.37
CDH1-211ENST00000567320 SPDYE2BA6NHP3 402 aa12.72□□□□□ -0.37
CDH1-211ENST00000567320 SPDYE6P0CI01 402 aa12.72□□□□□ -0.37
CDH1-211ENST00000567320 SPDYE2Q495Y8 402 aa12.72□□□□□ -0.37
CDH1-211ENST00000567320 ZNF692Q9BU19 519 aaPredicted RBP12.66□□□□□ -0.38
CDH1-211ENST00000567320 PITPNM1O00562 1244 aa12.6□□□□□ -0.39
CDH1-211ENST00000567320 CLEC11AQ9Y240 323 aa12.53□□□□□ -0.4
CDH1-211ENST00000567320 SSUH2Q9Y2M2 353 aa12.52□□□□□ -0.41
CDH1-211ENST00000567320 PIP4P2Q8N4L2 257 aa12.49□□□□□ -0.41
CDH1-211ENST00000567320 SPDYE1Q8NFV5 336 aaPredicted RBP12.48□□□□□ -0.41
CDH1-211ENST00000567320 PABPN1Q86U42 306 aaKnown RBP eCLIP12.46□□□□□ -0.41
CDH1-211ENST00000567320 FXR2P51116 673 aaKnown RBP eCLIP12.4□□□□□ -0.42
CDH1-211ENST00000567320 SPDYE4A6NLX3 237 aa12.32□□□□□ -0.44
CDH1-211ENST00000567320 PRR29P0C7W0 189 aa12.32□□□□□ -0.44
CDH1-211ENST00000567320 PRKAR2AP13861 404 aaKnown RBP12.31□□□□□ -0.44
CDH1-211ENST00000567320 HAX1O00165 279 aa12.3□□□□□ -0.44
CDH1-211ENST00000567320 CHADLQ6NUI6 762 aa12.22□□□□□ -0.45
CDH1-211ENST00000567320 SP7Q8TDD2 431 aaPredicted RBP12.16□□□□□ -0.46
CDH1-211ENST00000567320 STAG3Q9UJ98 1225 aa12.15□□□□□ -0.46
CDH1-211ENST00000567320 EVX2Q03828 476 aa12.05□□□□□ -0.48
CDH1-211ENST00000567320 FARP1Q9Y4F1 1045 aaPredicted RBP12.02□□□□□ -0.49
CDH1-211ENST00000567320 C19orf67A6NJJ6 358 aa12□□□□□ -0.49
CDH1-211ENST00000567320 CREBZFQ9NS37 354 aa11.96□□□□□ -0.49
CDH1-211ENST00000567320 CD44P16070 742 aaKnown RBP11.94□□□□□ -0.5
CDH1-211ENST00000567320 FKBP8Q14318 412 aa11.92□□□□□ -0.5
CDH1-211ENST00000567320 PROM2Q8N271 834 aa11.91□□□□□ -0.5
CDH1-211ENST00000567320 GABBR2O75899 941 aa11.83□□□□□ -0.52
CDH1-211ENST00000567320 NPM1P06748 294 aaKnown RBP eCLIP11.83□□□□□ -0.52
CDH1-211ENST00000567320 ZRANB1Q9UGI0 708 aa11.82□□□□□ -0.52
CDH1-211ENST00000567320 PAK3O75914 559 aaPredicted RBP11.8□□□□□ -0.52
CDH1-211ENST00000567320 PLEKHG5O94827 1062 aa11.8□□□□□ -0.52
CDH1-211ENST00000567320 MIER1Q8N108 512 aa11.79□□□□□ -0.52
CDH1-211ENST00000567320 PLCD3Q8N3E9 789 aa11.74□□□□□ -0.53
CDH1-211ENST00000567320 MNX1P50219 401 aaPredicted RBP11.73□□□□□ -0.53
CDH1-211ENST00000567320 ZNF579Q8NAF0 562 aaKnown RBP11.69□□□□□ -0.54
CDH1-211ENST00000567320 CLCN6P51797 869 aa11.67□□□□□ -0.54
CDH1-211ENST00000567320 TSPYL2Q9H2G4 693 aaPredicted RBP11.65□□□□□ -0.54
CDH1-211ENST00000567320 PHF12Q96QT6 1004 aa11.64□□□□□ -0.55
CDH1-211ENST00000567320 DCBLD2Q96PD2 775 aa11.63□□□□□ -0.55
CDH1-211ENST00000567320 FBXO3Q9UK99 471 aa11.62□□□□□ -0.55
CDH1-211ENST00000567320 ZBTB47Q9UFB7 747 aaPredicted RBP11.59□□□□□ -0.55
CDH1-211ENST00000567320 GALR2O43603 387 aaPredicted RBP11.57□□□□□ -0.56
CDH1-211ENST00000567320 POTEIP0CG38 1075 aa11.52□□□□□ -0.57
CDH1-211ENST00000567320 RASEFQ8IZ41 740 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms