RNA–Protein interactions for RNA: ENST00000566069.5

PALB2-204, Transcript of partner and localizer of BRCA2, humanhuman

TSL 5

Gene PALB2, Length 626 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-204ENST00000566069 AEBP2Q6ZN18 517 aaPredicted RBP26.49■■□□□ 1.83
PALB2-204ENST00000566069 CHIC1Q5VXU3 224 aa24.95■■□□□ 1.58
PALB2-204ENST00000566069 SENP3Q9H4L4 574 aaPredicted RBP22.48■■□□□ 1.19
PALB2-204ENST00000566069 PHF23Q9BUL5 403 aaPredicted RBP22.25■■□□□ 1.15
PALB2-204ENST00000566069 FOXD1Q16676 465 aa21.07■□□□□ 0.96
PALB2-204ENST00000566069 PLPPR3Q6T4P5 718 aa19.81■□□□□ 0.76
PALB2-204ENST00000566069 MSH5O43196 834 aa19.65■□□□□ 0.74
PALB2-204ENST00000566069 PPP6R1Q9UPN7 881 aa19.65■□□□□ 0.74
PALB2-204ENST00000566069 PIAS4Q8N2W9 510 aaPredicted RBP19.57■□□□□ 0.72
PALB2-204ENST00000566069 ADRA2BP18089 450 aa19.54■□□□□ 0.72
PALB2-204ENST00000566069 POTEDQ86YR6 584 aa19.52■□□□□ 0.72
PALB2-204ENST00000566069 MAPK8IP2Q13387 824 aaPredicted RBP18.02■□□□□ 0.48
PALB2-204ENST00000566069 DMRT2Q9Y5R5 561 aa17.85■□□□□ 0.45
PALB2-204ENST00000566069 SCAF1Q9H7N4 1312 aaKnown RBP17.73■□□□□ 0.43
PALB2-204ENST00000566069 PPP4R3CPQ6ZMV5 832 aa17.4■□□□□ 0.38
PALB2-204ENST00000566069 HOXD11P31277 338 aaPredicted RBP17.15■□□□□ 0.34
PALB2-204ENST00000566069 DCAF8L1A6NGE4 600 aa17.06■□□□□ 0.32
PALB2-204ENST00000566069 CNKSR2Q8WXI2 1034 aa17.06■□□□□ 0.32
PALB2-204ENST00000566069 CACNB1Q02641 598 aaPredicted RBP16.96■□□□□ 0.31
PALB2-204ENST00000566069 RNF216Q9NWF9 866 aaPredicted RBP16.95■□□□□ 0.3
PALB2-204ENST00000566069 RNF39Q9H2S5 420 aa16.82■□□□□ 0.28
PALB2-204ENST00000566069 NCBP3Q53F19 620 aaKnown RBP16.59■□□□□ 0.25
PALB2-204ENST00000566069 DNAJC5BQ9UF47 199 aa16.55■□□□□ 0.24
PALB2-204ENST00000566069 C1QBPQ07021 282 aaKnown RBP16.53■□□□□ 0.24
PALB2-204ENST00000566069 NPM3O75607 178 aaKnown RBP16.47■□□□□ 0.23
PALB2-204ENST00000566069 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.27■□□□□ 0.2
PALB2-204ENST00000566069 KCNA4P22459 653 aa16.04■□□□□ 0.16
PALB2-204ENST00000566069 U3KPZ7 1027 aaPredicted RBP15.99■□□□□ 0.15
PALB2-204ENST00000566069 SPINK5Q9NQ38 1064 aaPredicted RBP15.82■□□□□ 0.12
PALB2-204ENST00000566069 SLC4A2P04920 1241 aa15.8■□□□□ 0.12
PALB2-204ENST00000566069 DSG3P32926 999 aa15.73■□□□□ 0.11
PALB2-204ENST00000566069 CAPN15O75808 1086 aa15.71■□□□□ 0.11
PALB2-204ENST00000566069 TRHP20396 242 aaPredicted RBP15.45■□□□□ 0.06
PALB2-204ENST00000566069 ABCB7O75027 752 aa15.37■□□□□ 0.05
PALB2-204ENST00000566069 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.36■□□□□ 0.05
PALB2-204ENST00000566069 APLP2Q06481 763 aa15.36■□□□□ 0.05
PALB2-204ENST00000566069 HNRNPUL2Q1KMD3 747 aaKnown RBP15.36■□□□□ 0.05
PALB2-204ENST00000566069 ZNF219Q9P2Y4 722 aaPredicted RBP15.36■□□□□ 0.05
PALB2-204ENST00000566069 SAMD1Q6SPF0 538 aaPredicted RBP15.3■□□□□ 0.04
PALB2-204ENST00000566069 POTEHQ6S545 545 aa15.23■□□□□ 0.03
PALB2-204ENST00000566069 MYCNP04198 464 aaPredicted RBP15.16■□□□□ 0.02
PALB2-204ENST00000566069 SLC4A1APQ9BWU0 796 aaKnown RBP15.04■□□□□ -0
PALB2-204ENST00000566069 POLA2Q14181 598 aa15.03■□□□□ -0
PALB2-204ENST00000566069 ATF5Q9Y2D1 282 aaPredicted RBP14.95□□□□□ -0.02
PALB2-204ENST00000566069 FOXD4L1Q9NU39 408 aa14.94□□□□□ -0.02
PALB2-204ENST00000566069 RBM42Q9BTD8 480 aaKnown RBP14.89□□□□□ -0.03
PALB2-204ENST00000566069 ZBTB22O15209 634 aa14.78□□□□□ -0.04
PALB2-204ENST00000566069 CHRDL2Q6WN34 429 aa14.68□□□□□ -0.06
PALB2-204ENST00000566069 ZBTB12Q9Y330 459 aaPredicted RBP14.59□□□□□ -0.07
PALB2-204ENST00000566069 AKT1S1Q96B36 256 aa14.58□□□□□ -0.08
PALB2-204ENST00000566069 OSCARQ8IYS5 282 aa14.54□□□□□ -0.08
PALB2-204ENST00000566069 ATXN8OSP0DMR3 200 aa14.49□□□□□ -0.09
PALB2-204ENST00000566069 REM2Q8IYK8 340 aaPredicted RBP14.48□□□□□ -0.09
PALB2-204ENST00000566069 PIP4P2Q8N4L2 257 aa14.33□□□□□ -0.12
PALB2-204ENST00000566069 PITPNM1O00562 1244 aa14.32□□□□□ -0.12
PALB2-204ENST00000566069 FXR2P51116 673 aaKnown RBP eCLIP14.25□□□□□ -0.13
PALB2-204ENST00000566069 MKRN4PQ13434 485 aaPredicted RBP14.24□□□□□ -0.13
PALB2-204ENST00000566069 SPDYE2BA6NHP3 402 aa14.2□□□□□ -0.14
PALB2-204ENST00000566069 SPDYE6P0CI01 402 aa14.2□□□□□ -0.14
PALB2-204ENST00000566069 FBLN2P98095 1184 aa14.2□□□□□ -0.14
PALB2-204ENST00000566069 SPDYE2Q495Y8 402 aa14.2□□□□□ -0.14
PALB2-204ENST00000566069 SP7Q8TDD2 431 aaPredicted RBP14.2□□□□□ -0.14
PALB2-204ENST00000566069 HAX1O00165 279 aa14.08□□□□□ -0.16
PALB2-204ENST00000566069 SSUH2Q9Y2M2 353 aa14.04□□□□□ -0.16
PALB2-204ENST00000566069 EVX2Q03828 476 aa14.03□□□□□ -0.16
PALB2-204ENST00000566069 ZNF692Q9BU19 519 aaPredicted RBP14.03□□□□□ -0.16
PALB2-204ENST00000566069 CSRNP3Q8WYN3 585 aa13.98□□□□□ -0.17
PALB2-204ENST00000566069 SPDYE1Q8NFV5 336 aaPredicted RBP13.97□□□□□ -0.17
PALB2-204ENST00000566069 CLEC11AQ9Y240 323 aa13.97□□□□□ -0.17
PALB2-204ENST00000566069 PRKAR2AP13861 404 aaKnown RBP13.93□□□□□ -0.18
PALB2-204ENST00000566069 PABPN1Q86U42 306 aaKnown RBP eCLIP13.82□□□□□ -0.2
PALB2-204ENST00000566069 CHADLQ6NUI6 762 aa13.79□□□□□ -0.2
PALB2-204ENST00000566069 C19orf67A6NJJ6 358 aa13.78□□□□□ -0.2
PALB2-204ENST00000566069 PRR29P0C7W0 189 aa13.72□□□□□ -0.21
PALB2-204ENST00000566069 EHMT2Q96KQ7 1210 aa13.63□□□□□ -0.23
PALB2-204ENST00000566069 GABBR2O75899 941 aa13.62□□□□□ -0.23
PALB2-204ENST00000566069 FARP1Q9Y4F1 1045 aaPredicted RBP13.54□□□□□ -0.24
PALB2-204ENST00000566069 CD44P16070 742 aaKnown RBP13.46□□□□□ -0.25
PALB2-204ENST00000566069 CREBZFQ9NS37 354 aa13.42□□□□□ -0.26
PALB2-204ENST00000566069 SPDYE4A6NLX3 237 aa13.4□□□□□ -0.26
PALB2-204ENST00000566069 POTEIP0CG38 1075 aa13.4□□□□□ -0.26
PALB2-204ENST00000566069 STAG3Q9UJ98 1225 aa13.36□□□□□ -0.27
PALB2-204ENST00000566069 LHX8Q68G74 356 aa13.33□□□□□ -0.28
PALB2-204ENST00000566069 CLCN6P51797 869 aa13.26□□□□□ -0.29
PALB2-204ENST00000566069 ZNF579Q8NAF0 562 aaKnown RBP13.26□□□□□ -0.29
PALB2-204ENST00000566069 ZRANB1Q9UGI0 708 aa13.26□□□□□ -0.29
PALB2-204ENST00000566069 MNX1P50219 401 aaPredicted RBP13.21□□□□□ -0.29
PALB2-204ENST00000566069 GALR2O43603 387 aaPredicted RBP13.16□□□□□ -0.3
PALB2-204ENST00000566069 DCBLD2Q96PD2 775 aa13.14□□□□□ -0.31
PALB2-204ENST00000566069 PROM2Q8N271 834 aa13.13□□□□□ -0.31
PALB2-204ENST00000566069 PHF12Q96QT6 1004 aa13.09□□□□□ -0.31
PALB2-204ENST00000566069 NPM1P06748 294 aaKnown RBP eCLIP13.06□□□□□ -0.32
PALB2-204ENST00000566069 PAK3O75914 559 aaPredicted RBP13.02□□□□□ -0.33
PALB2-204ENST00000566069 POTEB2H3BUK9 544 aa12.96□□□□□ -0.33
PALB2-204ENST00000566069 PELP1Q8IZL8 1130 aaKnown RBP12.96□□□□□ -0.33
PALB2-204ENST00000566069 MS4A3Q96HJ5 214 aa12.91□□□□□ -0.34
PALB2-204ENST00000566069 OTUD5Q96G74 571 aa12.9□□□□□ -0.34
PALB2-204ENST00000566069 TSPYL2Q9H2G4 693 aaPredicted RBP12.89□□□□□ -0.35
PALB2-204ENST00000566069 CCDC61Q9Y6R9 512 aa12.87□□□□□ -0.35
PALB2-204ENST00000566069 ASTLQ6HA08 431 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms